Structure database (LMSD)

  MDLMOL files can be opened in various drawing programs. In ChemDraw, open as filetype "MDL Molfile".
LM IDLMGP02060031
Common Name1-(2-methoxy-5Z,9Z-hexacosadienyl)-sn-glycero-3-phosphoethanolamine
Systematic Name1-(2-methoxy-5Z,9Z-hexacosadienyl)-sn-glycero-3-phosphoethanolamine
SynonymsPE(2-OMe-26:2(5Z,9Z)/0:0)
Exact Mass
605.4420 (neutral)    Calculate m/z:
FormulaC32H64NO7P
CategoryGlycerophospholipids [GP]
Main ClassGlycerophosphoethanolamines [GP02]
Sub ClassMonoalkylglycerophosphoethanolamines [GP0206]
PubChem CID-
InChIKeyJLRBRJPLNVJDGV-KICXUCCOSA-N  Show lipids differing only in stereochemistry/bond geometry
InChIInChI=1S/C32H64NO7P/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-2
4-25-32(37-2)30-38-28-31(34)29-40-41(35,36)39-27-26-33/h18-19,22-23,31-32,34H,3-
17,20-21,24-30,33H2,1-2H3,(H,35,36)/b19-18-,23-22-/t31-,32?/m1/s1
SMILES[C@](COP(=O)(O)OCCN)([H])(O)COCC(OC)CC/C=C\CC/C=C\CCCCCCCCCCCCCCCC
StatusActive
ReferencesNew advances in the chemistry of methoxylated lipids. N. M. Carballeira. Progress in Lipid Research. Volume 41, Issue 6, November 2002, Pages 437-456.

https://www.sciencedirect.com/science/article/pii/S016378270200005X?via%3Dihub%3Dihub


Calculated physicochemical properties (?):
 Heavy Atoms41Rings0Aromatic Rings0Rotatable Bonds32
 van der Waals
Molecular Volume
649.24Topological Polar
Surface Area
120.47Hydrogen
Bond Donors
3Hydrogen
Bond Acceptors
8
 logP10.18Molar
Refractivity
173.42    
LIPID MAPS abbreviations for glycerophospholipids (GP)

The LIPID MAPS glycerophospholipid abbreviations (PC, PE, etc.) are used here to refer to species with one or two radyl side-chains where the structures of the side chains are indicated within parentheses in the 'Headgroup(sn1/sn2)' format (e.g. PC(16:0/18:1(9Z)). By default, R stereochemistry at the C-2 carbon of glycerol and attachment of the headgroup at the sn3 position is assumed. Also, acyl chains are assumed by default. The 'O-' prefix is used to indicate the presence of an alkyl ether substituent e.g. PC(O-16:0/18:1(9Z)), whereas the 'P-' prefix is used for the 1Z-alkenyl ether (Plasmalogen) substituent e.g. PC(P-16:0/18:1(9Z)).

For molecules with opposite (S) stereochemistry at C2 of the glycerol group and attachment of the headgroup at the sn1 position, the stereochemistry specification of [S] is appended to the abbreviation. The 'Headgroup(sn3/sn2)' abbreviation format is used.

For molecules with unknown stereochemistry at the C-2 carbon of the glycerol group, the stereochemistry specification of [U] is appended to the abbreviation and the structure is drawn with C-2 stereochemistry unspecified.