Downloads

Databases

LIPID MAPS Structure Database (LMSD)

Exports of structures and annotations, updated December 06, 2016

Annotations include:
LM_ID, COMMON_NAME, CATEGORY, MAIN_CLASS, SUB_CLASS, CHEBI_ID, INCHI_KEY,LIPID_MAPS_CMPD_URL,
PUBCHEM_SUBSTANCE_URL, SYSTEMATIC_NAME, SYNONYMS,EXACT_MASS, FORMULA, LIPIDBANK_ID,
PUBCHEM_SID, KEGG_ID, HMDBID, INCHI KEY, INCHI STRING, STATUS
LMSD Structure-data file (SDF)
LMSDFDownload6Dec16.tar.gz (44MB)
LMSDFDownload6Dec16.zip (44MB)

LIPID MAPS Proteome Database (LMPD)

Exports of structures and annotations, updated April 2, 2015

Annotations include:
 LMP ID, ENTREZ GENE ID, GENE NAME, GENE SYMBOL, REFSEQ ID, MRNA ID, GENBANK PROTEIN GI, SEQUENCE,
SEQUENCE LENGTH,UNIPROT ID, PROTEIN ENTRY, PROTEIN NAME, TAXONOMY ID, SPECIES.
LMPD tab-delimited text file
LMPD_040215.zip (3.4MB)

Tools

LIPID MAPS Structure Drawing Tools Package - Command line Perl scripts to generate SD files containing structure and ontological data for various lipid categories.

LIPID MAPS Mass Spectrometry Combinatorial Expansion Package - A set of command line PHP scripts to generate tabular datasets contining species name, m/z and molecular formula for some of the main lipid categories. User-defined options include a range of chain-lengths and a choice of poitive and negative ion-types. The generated MS datasets may then be used as databases or references to aid in identification and assignment of ions in mass spectrometry experiments of lipids. The current version supports Glycerolipids (GL), Glycerophospholipids (GP), Cardiolipins (CL) and Sphingolipids (SP).

  • Download Mass Spectrometry Combinatorial Expansion package and documentation: Details

LIPID MAPS Ontology Tools Package. Command line Perl script to generate ontology data using structure data in SD file(s). The LIPID MAPS ontology script uses Perl modules from MayaChemTools package, an external open source Perl package, to generate ontology data and requires its local installation.

Protocols

Please see our Protocols page for protocol descriptions and links to download protocols in PDF format.

Posters

Download posters generated by LIPID MAPS consortium members.

logo LIPID MAPS® is funded by a grant from the Wellcome Trust.