LIPID MAPS databases
- LIPID MAPS Structure Database (LMSD)
The LIPID MAPS Structure Database (LMSD) is comprised of structures and annotations of biologically relevant lipids, and includes representative examples from each category of the LIPID MAPS Lipid Classification system.
- Command line access of the LIPID MAPS Structure Database (LMSD) - instructions for command line data retrieval as CSV, TSV, and SDF files. Command line parameter options are explained and a number of examples are provided.
- How to search LMSD by structure or sub-structure - Instructions and screen shots demonstrating how to use the MarvinSketch Applet to search for lipids by drawing a complete or partial structure, and optionally specifying a partial lipid name.
- How to search LMSD by text or ontology. - Instructions and screen shots demonstrating how to use the text/ontology search form to search for lipids by various combinations of lipid annotations, including name, classification, and ontology parameters.
- How to search LMSD by text and/or ontology. (2:22) - Screencast demo
- LIPID MAPS Proteome Database (LMPD)
The LIPID MAPS Proteome Database (LMPD) is an object-relational database of lipid-associated genes and proteins. It contains data for over 8,500 genes and over 12,000 proteins from Homo sapiens, Mus musculus, Rattus norvegicus, Saccharomyces cerevisiae, Caenorhabditis elegans, Escherichia coli, Macaca mulata, Drosophila melanogaster, Arabidopsis thaliana and Danio rerio.
- Lipidomics Gateway "Quick search"
The Quick search can be used to search the entire Lipidomics Gateway, including all text and database entries.
- Quick Search Tutorial - Instructions and examples demonstrating how to search by lipid class, name, synonym, abbreviation or lipid-related gene/protein name; lipid abbreviation; SwissProt ID; gene symbol or annotation; chemical formula; lipid mass; LIPID MAPS ID; or InChIKey.