Structure database (LMSD)

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LM IDLMSP02020051
Common NameCer(d18:0/25:0)
Systematic NameN-(pentacosanoyl)-sphinganine
SynonymsN-(pentacosanoyl)-dihydroceramide; Cer[NDS]
Exact Mass
665.6686 (neutral)    Calculate m/z:
FormulaC43H87NO3
CategorySphingolipids [SP]
Main ClassCeramides [SP02]
Sub ClassN-acylsphinganines (dihydroceramides) [SP0202]
PubChem CID53481050
HMDB IDHMDB0011770
InChIKeyHCDLRJUFVJOBJP-ACEXITHZSA-N  Show lipids differing only in stereochemistry/bond geometry
InChI
InChI=1S/C43H87NO3/c1-3-5-7-9-11-13-15-17-18-19-20-21-22-23-24-25-27-29-31-33-35-37-39-43(47)44-41(40-45)42(46)38-36-34-32-30-28-26-16-14-12-10-8-6-4-2/h41-42,45-46H,3-40H2,1-2H3,(H,44,47)/t41-,42+/m0/s1
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SMILES
[C@](CO)([H])(NC(CCCCCCCCCCCCCCCCCCCCCCCC)=O)[C@]([H])(O)CCCCCCCCCCCCCCC
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StatusActive
ReferencesComparative profiling and comprehensive quantification of stratum corneum ceramides in humans and mice by LC-MS/MS.
J Lipid Res. 2020
DOI: 10.1194/jlr.RA120000671
PMID: 32265320
Calculated physicochemical properties (?):
 Heavy Atoms47Rings0Aromatic Rings0Rotatable Bonds40
 van der Waals
Molecular Volume
787.19Topological Polar
Surface Area
69.56Hydrogen
Bond Donors
3Hydrogen
Bond Acceptors
4
 logP14.16Molar
Refractivity
208.71