Structure database (LMSD)

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LM IDLMGP21010010
Common NameAm-PE(18:1(9Z)/18:1(9Z))
Systematic NameN-(1-deoxyfructosyl)- ,2-di-(9Z-octadecenoyl)-sn-glycero-3-phosphoethanolamine
SynonymsAmadori-PE 18:1/18:1
Exact Mass
905.5993 (neutral)    Calculate m/z:
FormulaC47H88NO13P
CategoryGlycerophospholipids [GP]
Main ClassGlycerophosphoethanolamine glycans [GP21]
Sub ClassDiacylglycerophosphoethanolamine glycans [GP2101]
AbbrevAm-Hex-PE 36:2
Abbrev ChainsAm-Hex-PE 18:1_18:1
PubChem CID102239024
InChIKeyVPDJFMOOUPPWQU-CCJLRHSGSA-N  Show lipids differing only in stereochemistry/bond geometry
InChI
InChI=1S/C47H88NO13P/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-43(50)57-37-41(61-44(51)34-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2)38-60-62(55,56)59-36-35-48-40-47(54)46(53)45(52)42(49)39-58-47/h17-20,41-42,45-46,48-49,52-54H,3-16,21-40H2,1-2H3,(H,55,56)/b19-17-,20-18-/t41-,42-,45-,46+,47-/m1/s1
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SMILES
[C@](COP(=O)(O)OCCNC[C@@]1(O)OC[C@@H](O)[C@@H](O)[C@@H]1O)([H])(OC(=O)CCCCCCC/C=C\CCCCCCCC)COC(=O)CCCCCCC/C=C\CCCCCCCC
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StatusActive
Calculated physicochemical properties (?):
 Heavy Atoms62Rings1Aromatic RingsRotatable Bonds44
 van der Waals
Molecular Volume
943.84Topological Polar
Surface Area
212.61Hydrogen
Bond Donors
6Hydrogen
Bond Acceptors
14
 logP12.35Molar
Refractivity
248.63    
LIPID MAPS® abbreviations for glycerophospholipids (GP)

The LIPID MAPS® glycerophospholipid abbreviations (PC, PE, etc.) are used here to refer to species with one or two radyl side-chains where the structures of the side chains are indicated within parentheses in the 'Headgroup(sn1/sn2)' format (e.g. PC(16:0/18:1(9Z)). By default, R stereochemistry at the C-2 carbon of glycerol and attachment of the headgroup at the sn3 position is assumed. Also, acyl chains are assumed by default. The 'O-' prefix is used to indicate the presence of an alkyl ether substituent e.g. PC(O-16:0/18:1(9Z)), whereas the 'P-' prefix is used for the 1Z-alkenyl ether (Plasmalogen) substituent e.g. PC(P-16:0/18:1(9Z)).

For molecules with opposite (S) stereochemistry at C2 of the glycerol group and attachment of the headgroup at the sn1 position, the stereochemistry specification of [S] is appended to the abbreviation. The 'Headgroup(sn3/sn2)' abbreviation format is used.

For molecules with unknown stereochemistry at the C-2 carbon of the glycerol group, the stereochemistry specification of [U] is appended to the abbreviation and the structure is drawn with C-2 stereochemistry unspecified.