Structure Database (LMSD)

Common Name
N-(3-oxo-hexanoyl)-homoserine lactone
Systematic Name
N-(3-oxo-hexanoyl)-homoserine lactone
Synonyms
  • N-(3-Oxohexanoyl)homoserine lactone
LM ID
LMFA08030003
Formula
Exact Mass
Calculate m/z
213.100109
Status
Curated



Classification

Biological Context

Quorum sensing is a regulatory system used by bacteria for controlling gene expression in response to increasing cell density.1 This regulatory process manifests itself with a variety of phenotypes including biofilm formation and virulence factor production.2 Coordinated gene expression is achieved by the production, release, and detection of small diffusible signal molecules called autoinducers. The N-acylated homoserine lactones (AHLs) comprise one such class of autoinducers, each of which generally consists of a fatty acid coupled with homoserine lactone (HSL). Regulation of bacterial quorum sensing signaling systems to inhibit pathogenesis represents a new approach to antimicrobial therapy in the treatment of infectious diseases.3 AHLs vary in acyl group length (C4-C18), in the substitution of C3 (hydrogen, hydroxyl, or oxo group), and in the presence or absence of one or more carbon-carbon double bonds in the fatty acid chain. These differences confer signal specificity through the affinity of transcriptional regulators of the LuxR family.4 In one of the most-studied quorum-sensing systems in gram-negative bacteria, the LuxI AHL synthase catalyzes the production of N-(β-ketocaproyl)-L-homoserine lactone (N-(β-ketocaproyl)-L-HSL) utilizing S-adenosylmethionine and hexanoyl-acyl carrier protein as reaction substrates in the marine bioluminescence bacterium V. fischeri.5 At increased populations of the bacteria, localized higher concentrations of N-(β-ketocaproyl)-L-HSL, an endogenous ligand to transcriptional factor LuxR, leads to increased production of both the AHL synthase and proteins responsible for bioluminescence.1 Numerous other species of bacteria also employ N-(β-ketocaproyl)-L-HSL in cell-to-cell communication.6,7,8,9

This information has been provided by Cayman Chemical

References

1. Gould, T.A., Herman, J., Krank, J., et al. Specificity of acyl-homoserine lactone syntheses examined by mass spectrometry. J. Bacteriol. 188(2), 773-783 (2006).
5. Williams, P. Quorum sensing, communication and cross-kingdom signalling in the bacterial world. Microbiology 153 (Pt 12), 3923-3938 (2007).
8. Welch, M., Todd, D.E., Whitehead, N.A., et al. N-acyl homoserine lactone binding to the CarR receptor determines quorum-sensing specificity in Erwinia. EMBO J. 19(4), 631-641 (2000).
9. Schaefer, A.L., Val, D.L., Hanzelka, B.L., et al. Generation of cell-to-cell signals in quorum sensing: Acyl homoserine lactone synthase activity of a purified Vibrio fischeri LuxI protien. Proc. Natl. Acad. Sci. USA 93, 9505-9509 (1996).

References

Taxonomy Information

Curated from
NCBI taxonomy class
Reference
Aliivibrio fischeri (#668)
Gammaproteobacteria (#1236)
Structural identification of autoinducer of Photobacterium fischeri luciferase,
Biochemistry, 1981
Pubmed ID: 7236614

String Representations

InChiKey (Click to copy)
YRYOXRMDHALAFL-QMMMGPOBSA-N
InChi (Click to copy)
InChI=1S/C10H15NO4/c1-2-3-7(12)6-9(13)11-8-4-5-15-10(8)14/h8H,2-6H2,1H3,(H,11,13)/t8-/m0/s1
SMILES (Click to copy)
[C@@H]1(CCOC1=O)NC(=O)CC(=O)CCC

Other Databases

KEGG ID
CHEBI ID
PubChem CID
Cayman ID
PDB ID

Calculated Physicochemical Properties

Heavy Atoms 15
Rings 1
Aromatic Rings
Rotatable Bonds 5
Van der Waals Molecular Volume 207.44
Topological Polar Surface Area 74.54
Hydrogen Bond Donors 1
Hydrogen Bond Acceptors 5
logP 0.75
Molar Refractivity 53.04

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Created at
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Updated at
17th Nov 2020