Structure Database (LMSD)

Common Name
Emodin
Systematic Name
1,3,8-trihydroxy-6-methylanthracene-9,10-dione
Synonyms
LM ID
LMPK13040008
Formula
Exact Mass
Calculate m/z
270.052825
Status
Curated




Classification

Biological Context

Emodin is a naturally-occurring anthraquinone found in a variety of plants used in traditional Chinese medicine. Purified emodin has diverse effects, including the suppression of inflammation, dyslipidemia, and cancer.1,2,3 At a molecular level, emodin directly and selectively inhibits casein kinase II (IC50 = 0.89 μM).4,5 Through this action, it inhibits the COP9 signalosome, causing the stabilization of the tumor suppressor p53.5 Moreover, emodin acts as a phytoestrogen, binding human estrogen receptors and blocking 17β-estradiol binding with Ki values of 0.77 and 1.5 μM for ERα and ERβ, respectively.6

This information has been provided by Cayman Chemical

References

5. Matsuda, H., Shimoda, H., Morikawa, T., et al. Phytoestrogens from the roots of Polygonum cuspidatum (Polygonaceae): Structure-requirement of hydroxyanthraquinones for estrogenic activity. Bioorg. Med. Chem. Lett. 11(14), 1839-1842 (2001).
6. Sarno, S., De Moliner, E., Ruzzene, M., et al. Biochemical and three-dimensional-structural study of the specific inhibition of protein kinase CK2 by [5-oxo-5,6-dihydroindolo-(1,2-a)quinazolin-7-yl]acetic acid (IQA). Biochem. J. 374(Pt 3), 639-646 (2003).

References

Taxonomy Information

Curated from
NCBI taxonomy class
Reference
Senna tora (#362788)
Magnoliopsida (#3398)
Anthraquinones from the seeds of Cassia tora with inhibitory activity on protein glycation and aldose reductase.,
Biol Pharm Bull, 2007
Pubmed ID: 17978503

String Representations

InChiKey (Click to copy)
RHMXXJGYXNZAPX-UHFFFAOYSA-N
InChi (Click to copy)
InChI=1S/C15H10O5/c1-6-2-8-12(10(17)3-6)15(20)13-9(14(8)19)4-7(16)5-11(13)18/h2-5,16-18H,1H3
SMILES (Click to copy)
C12C(O)=CC(C)=CC=1C(=O)C1=C(C(O)=CC(O)=C1)C2=O

Other Databases

Wikipedia
KEGG ID
HMDB ID
CHEBI ID
PubChem CID
Cayman ID
PDB ID

Calculated Physicochemical Properties

Heavy Atoms 20
Rings 3
Aromatic Rings 2
Rotatable Bonds 0
Van der Waals Molecular Volume 232.01
Topological Polar Surface Area 94.83
Hydrogen Bond Donors 3
Hydrogen Bond Acceptors 5
logP 1.89
Molar Refractivity 69.48

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Created at
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Updated at
19th Apr 2021