Structure Database (LMSD)

Common Name
GlcCer(d16:1(4E)(15Me)/21:0(20Me)(2OH)
Systematic Name
N-(2-hydroxy-20-methylheneicosanoyl)-1-β-glucosyl-15-methyl-4E-hexadecasphingenine
Synonyms
LM ID
LMSP05010191
Formula
C45H87NO9
Exact Mass
Calculate m/z
785.638084
Sum Composition
HexCer 39:1;O3
Abbrev Chains
GlcCer 17:1;O2/22:0;O
Status
Active
Show lipids differing only in stereochemistry/bond geometry

Main

Classification

Category
Main Class
Sub Class
Sphingolipids [SP]
Neutral glycosphingolipids [SP05]
Simple Glc series [SP0501]

String Representations

InChiKey (Click to copy)
ATGXJFGLMUUJEK-DCZYIDNZSA-N
InChi (Click to copy)
InChI=1S/C45H87NO9/c1-35(2)29-25-21-17-13-10-8-6-5-7-9-11-15-20-24-28-32-39(49)44(53)46-37(34-54-45-43(52)42(51)41(50)40(33-47)55-45)38(48)31-27-23-19-16-12-14-18-22-26-30-36(3)4/h27,31,35-43,45,47-52H,5-26,28-30,32-34H2,1-4H3,(H,46,53)/b31-27+/t37-,38+,39?,40+,41+,42-,43+,45+/m0/s1
SMILES (Click to copy)
C([C@H](NC(C(O)CCCCCCCCCCCCCCCCCC(C)C)=O)[C@H](O)/C=C/CCCCCCCCCC(C)C)O[C@H]1[C@H](O)[C@@H](O)[C@H](O)[C@@H](CO)O1

References

Taxonomy Information

Curated from
NCBI taxonomy class
Reference
Caenorhabditis elegans (#6239)
Chromadorea (#119089)
The glycosylceramides of the nematode Caenorhabditis elegans contain an unusual, branched-chain sphingoid base.,
Lipids, 1995
Pubmed ID: 7651085

Other Databases

PubChem CID
171120274

Calculated Physicochemical Properties

Heavy Atoms 55
Rings 1
Aromatic Rings
Rotatable Bonds 36
Van der Waals Molecular Volume 859.53
Topological Polar Surface Area 171.01
Hydrogen Bond Donors 7
Hydrogen Bond Acceptors 10
logP 10.88
Molar Refractivity 227.60

Admin

Created at
14th Sep 2021
Updated at
14th Sep 2021