LIPID MAPS® SPARQL Endpoint
The LIPID MAPS® SPARQL Endpoint, enables federated queries over LIPID MAPS and our partners.
Documentation on how to use SPARQL can be found here.
We gratefully acknowledge members of the ELIXIR 2021 Hackathon “FAIR lipids” for collaborative working on this project, with specific mention of Maksim Kolchin, Jerven Bolleman (SIB), Denise Slenter (WikiPathways) and Egon Willighagen (WikiPathways).
You can use the following Python script to programmatically try out the SPARQL Endpoint.
It is possible to query the LIPID MAPS database with the following specifying objects:
- Prefix lipidmaps-o: abbrev and abbrevChains
- Prefix rdfs: label and subClassOf
- Prefix obo: equivalentClass
- Prefix chebi: formula, inchi, inchikey and monoisotopicmass
|Example Request||Example query||Example results|
|Fetch all lipids, categories and formulas in LIPID MAPS||
|Fetch all lipids in LIPID MAPS and SwissLipids||