Gene/Proteome Database (LMPD)

LMPD ID
LMP001508
Gene ID
Species
Mus musculus (Mouse)
Gene Name
retinol dehydrogenase 5
Gene Symbol
Synonyms
9-cis; AI987873; RDH4; cRDH
Chromosome
10
Map Location
10 D3|10 77.19 cM

Proteins

11-cis retinol dehydrogenase precursor
Refseq ID NP_598767
Protein GI 19549323
UniProt ID O55240
mRNA ID NM_134006
Length 318
RefSeq Status VALIDATED
MWLPLLLGALLWAVLWLLRDRQSLPASDAFIFITGCDSGFGRLLALQLDQKGFQVLAGCLTPSGAEDLQQMASSRLHTTLLDITDPQNVQQVAKWVKTRVGETGLFGLVNNAGVAGIIGPTPWLTQDDFQRVLSVNTLGPIGVTLALLPLLQQARGRVVNITSVLGRIAANGGGYCVSKFGLEAFSDSLRRDMAPFGVQVSIVEPGFFRTPVTNLESLESTLKACWARLPPAIQAHYGEAFLDTYLRVQRRIMNLICDPELTKVTSCLEHALTARHPRTRYSPGWDAKLLWLPASYLPARVVDAVLTWILPRPAQSVS
sig_peptide: 1..25 inference: COORDINATES: ab initio prediction:SignalP:4.0 calculated_mol_wt: 2975 peptide sequence: MWLPLLLGALLWAVLWLLRDRQSLP

Gene Information

Entrez Gene ID
Gene Name
retinol dehydrogenase 5
Gene Symbol
Species
Mus musculus

Gene Ontology (GO Annotations)

GO ID Source Type Description
GO:0044297 IEA:Ensembl C cell body
GO:0005788 IDA:MGI C endoplasmic reticulum lumen
GO:0016020 IEA:UniProtKB-KW C membrane
GO:0016491 IEA:UniProtKB-KW F oxidoreductase activity
GO:0050896 IEA:UniProtKB-KW P response to stimulus
GO:0042572 IEA:UniProtKB-UniPathway P retinol metabolic process
GO:0007601 IEA:UniProtKB-KW P visual perception

Domain Information

InterPro Annotations

Accession Description
IPR002347 Glucose/ribitol dehydrogenase
IPR016040 NAD(P)-binding domain
IPR002198 Short-chain dehydrogenase/reductase SDR

UniProt Annotations

Entry Information

Gene Name
retinol dehydrogenase 5
Protein Entry
O55240_MOUSE
UniProt ID
Species
Mouse

Comments

Comment Type Description
Catalytic Activity 11-cis-retinol-[retinal-binding-protein] + NAD(+) = 11-cis-retinal-[retinol-binding-protein] + NADH.
Developmental Stage Abundantly expressed during embryonic development, especially in the developing central nervous system and sensory organs, cranial and spinal ganglia and endoderm of foregut and hindgut. At E10, detected along the entire neural tube, the mid- and hindbrain floor, the central canal of the brain vesicles, spinal cord, lung mesenchyme, the trabecular layer of the heart ventricles, endoderm and endodermally-derived structures such as tracheal epithelium and liver. At E11, expressed in the brain vesicles, along the spinal cord, myotome, migrating muscle progenitor cells in the body wall, cells of the genital ridge, spinal ganglion, liver, cerebellar primordium, basal cells of the neuroepithelium of the mesenchephalic flexure, collections of cells in the pons, Rathke's pouch, spinal and cranial ganglia and the floor plate, retina, lens, optic stalks and the neural crest- derived mesenchyme in the anterior eye segment. During eye development, expression restricted to the retinal pigment epithelium of the posterior hemisphere at E18, with expression levels increasing postnatally to P16.
Disruption Phenotype Mutant mice develop normally and are fertile. No abnormalities can be found in the retinal structure, rhodopsin content and fundus appearance of their eyes. Mice display a mild visual phenotype of impaired dark adaptation and accumulation of 11-cis- and 13-cis-retinols and 11-cis- and 13- cis-retinyl esters in the eyes.
Enzyme Regulation Inhibited by 9-cis-, 13-cis- and all-trans- retinoic acids, with the most potent inhibitor being 13-cis- retinoic acid. Weakly inhibited by oleic acid.
Function Stereospecific 11-cis retinol dehydrogenase, which catalyzes the final step in the biosynthesis of 11-cis retinaldehyde, the universal chromophore of visual pigments. Also able to oxidize 9-cis-retinol and 13-cis-retinol, but not all- trans-retinol. Active in the presence of NAD as cofactor but not in the presence of NADP. {ECO:0000269|PubMed:10588954, ECO:0000269|PubMed:9539749}.
Pathway Cofactor metabolism; retinol metabolism.
Similarity Belongs to the short-chain dehydrogenases/reductases (SDR) family.
Subcellular Location Membrane ; Peripheral membrane protein . Endoplasmic reticulum lumen .
Tissue Specificity Expressed in eye, liver, kidney, brain, intestine, placenta, epididymus and submaxillary gland. In eye, strongly expressed in the retinal pigment epithelium, with lower expression levels detected in the inner segment of the photoreceptor cells and in the outer plexiform layer. In kidney, strong expression detected in the distal tubules and the transitional epithelium in the renal pelvis, with weaker expression detected in the epithelium of the outer stripe of the outer zone of the medulla. In liver, detected in hepatocytes in the centrilobular area. In lung, present in Clara cells in the epithelium of the bronchiole, in parenchyma and in cartilage surrounding the secondary bronchi. In skin, expressed in epidermis, hair follicles and mast cells in the dermis. Expressed in heart (PubMed:10588954 and PubMed:10739682). Not detected in heart (PubMed:9539749). Not detected in lung, spleen, skeletal muscle and testis. {ECO:0000269|PubMed:10588954, ECO:0000269|PubMed:10739682, ECO:0000269|PubMed:9539749, ECO:0000269|PubMed:9654122}.

Identical and Related Proteins

Unique RefSeq proteins for LMP001508 (as displayed in Record Overview)

Protein GI Database Accession Length Protein Name
19549323 RefSeq NP_598767 318 11-cis retinol dehydrogenase precursor

Identical Sequences to LMP001508 proteins

Reference Database Accession Length Protein Name
GI:19549323 DBBJ BAE22435.1 318 unnamed protein product [Mus musculus]
GI:19549323 GenBank AAH21372.1 318 Retinol dehydrogenase 5 [Mus musculus]
GI:19549323 GenBank AAM60360.1 318 Sequence 39 from patent US 6399344
GI:19549323 GenBank EDL24632.1 318 retinol dehydrogenase 5, isoform CRA_a [Mus musculus]
GI:19549323 RefSeq XP_006513450.1 318 PREDICTED: 11-cis retinol dehydrogenase isoform X3 [Mus musculus]
GI:19549323 SwissProt O55240.1 318 RecName: Full=11-cis retinol dehydrogenase; Short=11-cis RDH; Short=11-cis RoDH; AltName: Full=9-cis retinol dehydrogenase; AltName: Full=Cis-retinol dehydrogenase; AltName: Full=Retinol dehydrogenase 5; Flags: Precursor [Mus musculus]

Related Sequences to LMP001508 proteins

Reference Database Accession Length Protein Name
GI:19549323 GenBank EDL24633.1 328 retinol dehydrogenase 5, isoform CRA_b, partial [Mus musculus]
GI:19549323 RefSeq XP_006513448.1 320 PREDICTED: 11-cis retinol dehydrogenase isoform X1 [Mus musculus]
GI:19549323 RefSeq XP_006513449.1 320 PREDICTED: 11-cis retinol dehydrogenase isoform X2 [Mus musculus]
GI:19549323 RefSeq XP_008763276.1 320 PREDICTED: 11-cis retinol dehydrogenase isoform X2 [Rattus norvegicus]
GI:19549323 RefSeq XP_008763277.1 320 PREDICTED: 11-cis retinol dehydrogenase isoform X2 [Rattus norvegicus]
GI:19549323 RefSeq XP_008763278.1 318 PREDICTED: 11-cis retinol dehydrogenase isoform X1 [Rattus norvegicus]