Gene/Proteome Database (LMPD)

LMPD ID
LMP007178
Gene ID
Species
Saccharomyces cerevisiae S288c (Yeast (S288c))
Gene Name
Dgk1p
Gene Symbol
Synonyms
HSD1
Chromosome
XV
EC Number
2.7.1.174

Proteins

Dgk1p
Refseq ID NP_014956
Protein GI 398366205
UniProt ID Q12382
mRNA ID NM_001183731
Length 290
MGTEDAIALPNSTLEPRTEAKQRLSSKSHQVSAKVTIPAKEEISSSDDDAHVPVTEIHLKSHEWFGDFITKHEIPRKVFHSSIGFITLYLYTQGINYKNVLWPLIYAFIILFILDLIRLNWPFFNMLYCRTVGALMRKKEIHTYNGVLWYILGLIFSFNFFSKDVTLISLFLLSWSDTAAATIGRKYGHLTPKVARNKSLAGSIAAFTVGVITCWVFYGYFVPAYSYVNKPGEIQWSPETSRLSLNMLSLLGGVVAALSEGIDLFNWDDNFTIPVLSSLFMNAVIKTFKK

Gene Information

Entrez Gene ID
Gene Name
Dgk1p
Gene Symbol
Species
Saccharomyces cerevisiae S288c

Gene Ontology (GO Annotations)

GO ID Source Type Description
GO:0005794 IEA:UniProtKB-KW C Golgi apparatus
GO:0030176 IDA:SGD C integral component of endoplasmic reticulum membrane
GO:0016021 ISS:SGD C integral component of membrane
GO:0005634 IEA:UniProtKB-KW C nucleus
GO:0004143 IDA:SGD F diacylglycerol kinase activity
GO:0006654 IDA:SGD P phosphatidic acid biosynthetic process
GO:0016192 IEA:UniProtKB-KW P vesicle-mediated transport

KEGG Pathway Links

KEGG Pathway ID Description
ko00564 Glycerophospholipid metabolism
sce00564 Glycerophospholipid metabolism
sce01100 Metabolic pathways

BIOCYC Pathway Links

BIOCYC Pathway ID Description
TRIGLSYN-PWY triacylglycerol biosynthesis
TRIGLSYN-PWY triacylglycerol biosynthesis

Domain Information

InterPro Annotations

Accession Description
IPR000374 Phosphatidate cytidylyltransferase

UniProt Annotations

Entry Information

Gene Name
Dgk1p
Protein Entry
DGK1_YEAST
UniProt ID
Species
Yeast (S288c)

Comments

Comment Type Description
Biophysicochemical Properties Kinetic parameters: KM=0.3 mM for CTP {ECO:0000269|PubMed:18458076}; KM=0.4 mM for dCTP {ECO:0000269|PubMed:18458076}; Vmax=0.018 nM/min/mg enzyme {ECO:0000269|PubMed:18458076}; pH dependence: Optimum pH is 7.0-7.5. {ECO:0000269|PubMed:18458076}; Temperature dependence: Maximum activity at 30 degrees Celsius. Labile above 40 degrees Celsius. {ECO:0000269|PubMed:18458076};
Biophysicochemical Properties Kinetic parameters: KM=0.3 mM for CTP ; KM=0.4 mM for dCTP ; Vmax=0.018 nM/min/mg enzyme ; pH dependence: Optimum pH is 7.0-7.5. ; Temperature dependence: Maximum activity at 30 degrees Celsius. Labile above 40 degrees Celsius. ;
Catalytic Activity CTP + 1,2-diacyl-sn-glycerol = CDP + 1,2- diacyl-sn-glycerol 3-phosphate. {ECO:0000269|PubMed:18458075, ECO:0000269|PubMed:18458076}.
Cofactor Name=Ca(2+); Xref=ChEBI:CHEBI:29108; Evidence={ECO:0000269|PubMed:18458076}; Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000269|PubMed:18458076};
Cofactor Name=Ca(2+); Xref=ChEBI:CHEBI:29108; Evidence= ; Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence= ;
Enzyme Regulation Inhibited by N-ethylmaleimide, dCTP, and sphingoid bases including sphinganine, sphingosine and phytosphingosine. DAG pyrophosphate, cardiolipin, CDP-DAG, and lyso-PA inhibited activity by 23-66%. Also inhibited by Ca(2+) concentrations of more than 1 mM, by addition of EDTA or EGTA at 5 mM, and by 5 mM Mn(2+) and Zn(2+). Stimulated by major membrane phospholipids including phosphatidylcholine, phosphatidylethanolamine, phosphatidylinositol, phosphatidylserine, phosphatidylglycerol, and phosphatidate. Also stimulated to a maximum by addition of TritonX-100 at a concentration of 1 mM, followed by an apparent inhibition of activity at concentrations above 1 mM
Enzyme Regulation Inhibited by N-ethylmaleimide, dCTP, and sphingoid bases including sphinganine, sphingosine and phytosphingosine. DAG pyrophosphate, cardiolipin, CDP-DAG, and lyso-PA inhibited activity by 23-66%. Also inhibited by Ca(2+) concentrations of more than 1 mM, by addition of EDTA or EGTA at 5 mM, and by 5 mM Mn(2+) and Zn(2+). Stimulated by major membrane phospholipids including phosphatidylcholine, phosphatidylethanolamine, phosphatidylinositol, phosphatidylserine, phosphatidylglycerol, and phosphatidate. Also stimulated to a maximum by addition of TritonX-100 at a concentration of 1 mM, followed by an apparent inhibition of activity at concentrations above 1 mM. {ECO:0000269|PubMed:18458076}.
Function Involved in pre-tRNA splicing (By similarity). CTP- dependent diacylglycerol kinase that catalyzes the phosphorylation of diacylglycerol (DAG) to phosphatidate (PA). Controls phosphatidate levels at the nuclear envelope. Counteracts the activity of PAH1/SMP2. Involved in the resistance to nickel chloride and nalidixic acid. May be involved in vesicle trafficking between the endoplasmic reticulum and the Golgi apparatus. {ECO:0000250, ECO:0000269|PubMed:10407277, ECO:0000269|PubMed:11481671, ECO:0000269|PubMed:18458075}.
Miscellaneous Present with 784 molecules/cell in log phase SD medium
Miscellaneous Present with 784 molecules/cell in log phase SD medium. {ECO:0000269|PubMed:14562106}.
Miscellaneous Rescues the lethality of dephosphorylated PAH1/SMP2. Overexpression causes the appearance of phosphatidate- enriched membranes around the nucleus, leading to expansion of the nuclear membrane without proliferation of the cortical endoplasmic reticulum membrane. Deletion restores normal nuclear structure in PAH1/SMP2 deleted cells and returns the level of INO1 mRNA to normal. Deletion does not affect the abnormal levels of phosphatidylinositol and major neutral lipid triacylglycerol seen in the PAH1/SMP2 deletion mutant.
Similarity Belongs to the DGK1 family
Similarity Belongs to the DGK1 family. {ECO:0000305}.
Subcellular Location Endoplasmic reticulum membrane; Multi-pass membrane protein. Golgi apparatus membrane; Multi-pass membrane protein. Nucleus membrane; Multi-pass membrane protein.

Identical and Related Proteins

Unique RefSeq proteins for LMP007178 (as displayed in Record Overview)

Protein GI Database Accession Length Protein Name
398366205 RefSeq NP_014956 290 Dgk1p

Identical Sequences to LMP007178 proteins

Reference Database Accession Length Protein Name

Related Sequences to LMP007178 proteins

Reference Database Accession Length Protein Name