Gene/Proteome Database (LMPD)

LMPD ID
LMP007256
Gene ID
Species
Saccharomyces cerevisiae S288c (Yeast (S288c))
Gene Name
Nup53p
Gene Symbol
Synonyms
-
Chromosome
XIII

Proteins

Nup53p
Refseq ID NP_013873
Protein GI 6323802
UniProt ID Q03790
mRNA ID NM_001182656
Length 475
MADLQKQENSSRFTNVSVIAPESQGQHEQQKQQEQLEQQKQPTGLLKGLNGFPSAPQPLFMEDPPSTVSGELNDNPAWFNNPRKRAIPNSIIKRSNGQSLSPVRSDSADVPAFSNSNGFNNVTFGSKKDPRILKNVSPNDNNSANNNAHSSDLGTVVFDSNEAPPKTSLADWQKEDGIFSSKTDNIEDPNLSSNITFDGKPTATPSPFRPLEKTSRILNFFDKNTKTTPNTASSEASAGSKEGASTNWDDHAIIIFGYPETIANSIILHFANFGEILEDFRVIKDFKKLNSKNMSKSPSLTAQKYPIYTGDGWVKLTYKSELSKSRALQENGIIMNGTLIGCVSYSPAALKQLASLKKSEEIINNKTSSQTSLSSKDLSNYRKTEGIFEKAKAKAVTSKVRNAEFKVSKNSTSFKNPRRLEIKDGRSLFLRNRGKIHSGVLSSIESDLKKREQASKSKKSWLNRLNNWLFGWNDL

Gene Information

Entrez Gene ID
Gene Name
Nup53p
Gene Symbol
Species
Saccharomyces cerevisiae S288c

Gene Ontology (GO Annotations)

GO ID Source Type Description
GO:0005643 IDA:SGD C nuclear pore
GO:0044613 IDA:SGD C nuclear pore central transport channel
GO:0044615 IDA:SGD C nuclear pore nuclear basket
GO:0005487 IPI:SGD F nucleocytoplasmic transporter activity
GO:0005543 IDA:SGD F phospholipid binding
GO:0003697 IDA:SGD F single-stranded DNA binding
GO:0006607 IMP:SGD P NLS-bearing protein import into nucleus
GO:0051028 IEA:UniProtKB-KW P mRNA transport
GO:0007067 IEA:UniProtKB-KW P mitotic nuclear division
GO:0007094 IMP:SGD P mitotic spindle assembly checkpoint
GO:0006999 IGI:SGD P nuclear pore organization
GO:0045893 IDA:SGD P positive regulation of transcription, DNA-templated
GO:0006606 IGI:SGD P protein import into nucleus
GO:0007088 IMP:SGD P regulation of mitosis
GO:0060188 IMP:SGD P regulation of protein desumoylation

Domain Information

InterPro Annotations

Accession Description
IPR007846 RNA-recognition motif (RRM) Nup35-type domain

UniProt Annotations

Entry Information

Gene Name
Nup53p
Protein Entry
NUP53_YEAST
UniProt ID
Species
Yeast (S288c)

Comments

Comment Type Description
Domain Contains FG repeats. FG repeats are interaction sites for karyopherins (importins, exportins) and form probably an affinity gradient, guiding the transport proteins unidirectionally with their cargo through the NPC. FG repeat regions are highly flexible and lack ordered secondary structure. The overall conservation of FG repeats regarding exact sequence, spacing, and repeat unit length is limited. FG repeat types and their physico-chemical environment change across the NPC from the nucleoplasmic to the cytoplasmic side
Domain Contains FG repeats. FG repeats are interaction sites for karyopherins (importins, exportins) and form probably an affinity gradient, guiding the transport proteins unidirectionally with their cargo through the NPC. FG repeat regions are highly flexible and lack ordered secondary structure. The overall conservation of FG repeats regarding exact sequence, spacing, and repeat unit length is limited. FG repeat types and their physico-chemical environment change across the NPC from the nucleoplasmic to the cytoplasmic side. {ECO:0000269|PubMed:12403813}.
Domain The RRM Nup35-type domain might be involved in the control of mitosis
Domain The RRM Nup35-type domain might be involved in the control of mitosis. {ECO:0000269|PubMed:12403813}.
Function Functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. Active directional transport is assured by both, a Phe-Gly (FG) repeat affinity gradient for these transport factors across the NPC and a transport cofactor concentration gradient across the nuclear envelope (GSP1 and GSP2 GTPases associated predominantly with GTP in the nucleus, with GDP in the cytoplasm). NUP53 may play an important role in cell cycle regulation by inhibiting PSE1 transport functions during mitosis and sequestration of MAD1-MAD2 in a cell cycle-dependent manner. It also seems to play an important role in de novo NPC assembly by associating with nuclear membranes and driving their proliferation. {ECO:0000269|PubMed:11352933, ECO:0000269|PubMed:12403813, ECO:0000269|PubMed:12473689, ECO:0000269|PubMed:12604785, ECO:0000269|PubMed:14697200, ECO:0000269|PubMed:9864357}.
Interaction P38181:NUP170; NbExp=5; IntAct=EBI-27321, EBI-11756;
Miscellaneous Present with 2060 molecules/cell in log phase SD medium
Miscellaneous Present with 2060 molecules/cell in log phase SD medium. {ECO:0000269|PubMed:14562106}.
Ptm Phosphorylated by CDC28. {ECO:0000269|PubMed:14574415, ECO:0000269|PubMed:18407956, ECO:0000269|PubMed:19779198, ECO:0000269|PubMed:9864357}.
Similarity Contains 1 RRM Nup35-type domain
Similarity Contains 1 RRM Nup35-type domain. {ECO:0000255|PROSITE-ProRule:PRU00804}.
Subcellular Location Nucleus, nuclear pore complex. Nucleus membrane; Peripheral membrane protein; Cytoplasmic side. Nucleus membrane; Peripheral membrane protein; Nucleoplasmic side. Note=Symmetric distribution.
Subunit The nuclear pore complex (NPC) constitutes the exclusive means of nucleocytoplasmic transport. NPCs allow the passive diffusion of ions and small molecules and the active, nuclear transport receptor-mediated bidirectional transport of macromolecules such as proteins, RNAs, ribonucleoparticles (RNPs), and ribosomal subunits across the nuclear envelope. The 55-60 MDa NPC is composed of at least 31 different subunits: ASM4, CDC31, GLE1, GLE2, NDC1, NIC96, NSP1, NUP1, NUP2, NUP100, NUP116, NUP120, NUP133, NUP145, NUP157, NUP159, NUP170, NUP188, NUP192, NUP42, NUP49, NUP53, NUP57, NUP60, NUP82, NUP84, NUP85, POM152, POM34, SEH1 and SEC1. Due to its 8-fold rotational symmetry, all subunits are present with 8 copies or multiples thereof. NUP53 interacts with MAD1-MAD2. During mitosis NUP53 changes its binding partner within the NPC from NUP170 to NIC96, exposing a high affinity binding site for the karyopherin PSE1, and retaining it in the NPC, while MAD2 is released. It forms a subcomplex with ASM4 and NDC1. {ECO:0000269|PubMed:10688190, ECO:0000269|PubMed:11283351, ECO:0000269|PubMed:9864357}.

Identical and Related Proteins

Unique RefSeq proteins for LMP007256 (as displayed in Record Overview)

Protein GI Database Accession Length Protein Name
6323802 RefSeq NP_013873 475 Nup53p

Identical Sequences to LMP007256 proteins

Reference Database Accession Length Protein Name

Related Sequences to LMP007256 proteins

Reference Database Accession Length Protein Name