Gene/Proteome Database (LMPD)

LMPD ID
LMP010350
Gene ID
821560
Species
Arabidopsis thaliana (Arabidopsis)
Gene Name
geranylgeranyl pyrophosphate synthase 10
Gene Symbol
AT3G20160
Alternate Names
geranylgeranyl pyrophosphate synthase 10
Chromosome
3
EC Number
2.5.1.-

Proteins

geranylgeranyl pyrophosphate synthase 10
Refseq ID NP_188651
Protein GI 15231055
UniProt ID Q9LJY2
mRNA ID NM_112907
Length 344
RefSeq Status REVIEWED
MENREVFVYIVISIFRSLQFLFWRFRPRYNDVTSALTRPLTSAASYDFKFMSYMVNKAKSVNKALEEAVPLREPELKIREAMRYTLLSDGKRVRPMLCLAACELVGGQESTAMSAACAIEMLHASSLILDDLPCMDNDSLRRGKPTNHIVFGESIAILASQALIALAVQKTTSSTFADVPPERILKTVQEMVKAVEGLVAGQQADLAGEGMRFDSDTGLEHLEFIHIHKTAALLEAAAVMGAIMGGGSDEEIERLRSYARCIGLMFQVVDDVLDVTKSSEELGKTAGKDLIAGKLTYPRLMGVEKSKEYAERLNIEAREHLLGFDIDKVAPLVSLADYIVNRQN

Gene Information

Entrez Gene ID
821560
Gene Name
geranylgeranyl pyrophosphate synthase 10
Gene Symbol
AT3G20160
Species
Arabidopsis thaliana

Gene Ontology (GO Annotations)

GO ID Source Type Description
GO:0005739 IEA:UniProtKB-KW C mitochondrion
GO:0004161 IEA:UniProtKB-EC F dimethylallyltranstransferase activity
GO:0004311 ISS:TAIR F farnesyltranstransferase activity
GO:0004337 IEA:UniProtKB-EC F geranyltranstransferase activity
GO:0046872 IEA:UniProtKB-KW F metal ion binding
GO:0016117 IEA:UniProtKB-KW P carotenoid biosynthetic process
GO:0045337 IEA:UniProtKB-UniPathway P farnesyl diphosphate biosynthetic process
GO:0033384 IEA:UniProtKB-UniPathway P geranyl diphosphate biosynthetic process
GO:0033386 IEA:UniProtKB-UniPathway P geranylgeranyl diphosphate biosynthetic process

KEGG Pathway Links

KEGG Pathway ID Description
ath01110 Biosynthesis of secondary metabolites
ath01100 Metabolic pathways
ath00900 Terpenoid backbone biosynthesis
ko00900 Terpenoid backbone biosynthesis

Domain Information

InterPro Annotations

Accession Description
IPR008949 Isoprenoid synthase domain
IPR000092 Polyprenyl synthetase
IPR017446 Polyprenyl synthetase-related

UniProt Annotations

Entry Information

Gene Name
geranylgeranyl pyrophosphate synthase 10
Protein Entry
GGPPA_ARATH
UniProt ID
Q9LJY2
Species
Arabidopsis

Comments

Comment Type Description
Catalytic Activity (2E,6E)-farnesyl diphosphate + isopentenyl diphosphate = diphosphate + geranylgeranyl diphosphate.
Catalytic Activity Dimethylallyl diphosphate + isopentenyl diphosphate = diphosphate + geranyl diphosphate.
Catalytic Activity Geranyl diphosphate + isopentenyl diphosphate = diphosphate + (2E,6E)-farnesyl diphosphate.
Cofactor Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250}; Note=Binds 3 Mg(2+) ions per subunit. {ECO:0000250};
Function Catalyzes the trans-addition of the three molecules of IPP onto DMAPP to form geranylgeranyl pyrophosphate. {ECO:0000250}.
Pathway Isoprenoid biosynthesis; farnesyl diphosphate biosynthesis; farnesyl diphosphate from geranyl diphosphate and isopentenyl diphosphate: step 1/1.
Pathway Isoprenoid biosynthesis; geranyl diphosphate biosynthesis; geranyl diphosphate from dimethylallyl diphosphate and isopentenyl diphosphate: step 1/1.
Pathway Isoprenoid biosynthesis; geranylgeranyl diphosphate biosynthesis; geranylgeranyl diphosphate from farnesyl diphosphate and isopentenyl diphosphate: step 1/1.
Sequence Caution Sequence=ABK28565.1; Type=Erroneous termination; Positions=345; Note=Translated as stop.; Evidence={ECO:0000305};
Similarity Belongs to the FPP/GGPP synthase family. {ECO:0000305}.
Subcellular Location Mitochondrion {ECO:0000305}.
Subunit Monomer. {ECO:0000250}.

Identical and Related Proteins

Unique RefSeq proteins for LMP010350 (as displayed in Record Overview)

Protein GI Database Accession Length Protein Name
15231055 RefSeq NP_188651 344 geranylgeranyl pyrophosphate synthase 10

Identical Sequences to LMP010350 proteins

Reference Database Accession Length Protein Name
GI:15231055 EMBL CBF64797.1 344 unnamed protein product [Arabidopsis thaliana]
GI:15231055 EMBL CBU89668.1 344 unnamed protein product [Arabidopsis thaliana]
GI:15231055 GenBank ABE65951.1 344 geranylgeranyl pyrophosphate synthase/GGPP synthetase/farnesyltranstransferase [Arabidopsis thaliana]
GI:15231055 GenBank AEE76342.1 344 geranylgeranyl pyrophosphate synthase 10 [Arabidopsis thaliana]
GI:15231055 GenBank AGX56670.1 344 Sequence 13678 from patent US 8541208
GI:15231055 SwissProt Q9LJY2.1 344 RecName: Full=Geranylgeranyl pyrophosphate synthase 10, mitochondrial; Short=GGPP synthase 10; Short=GGPS10; AltName: Full=(2E,6E)-farnesyl diphosphate synthase 10; AltName: Full=Dimethylallyltranstransferase 10; AltName: Full=Farnesyl diphosphate synthase 10; AltName: Full=Farnesyltranstransferase 10; AltName: Full=Geranyltranstransferase 10; Flags: Precursor [Arabidopsis thaliana]

Related Sequences to LMP010350 proteins

Reference Database Accession Length Protein Name
GI:15231055 GenBank ABK28565.1 345 unknown, partial [Arabidopsis thaliana]
GI:15231055 GenBank EOA30922.1 353 hypothetical protein CARUB_v10014070mg [Capsella rubella]
GI:15231055 RefSeq XP_006298024.1 353 hypothetical protein CARUB_v10014070mg [Capsella rubella]
GI:15231055 RefSeq XP_010508563.1 356 PREDICTED: geranylgeranyl pyrophosphate synthase 10, mitochondrial-like [Camelina sativa]
GI:15231055 RefSeq XP_010466197.1 356 PREDICTED: geranylgeranyl pyrophosphate synthase 10, mitochondrial-like [Camelina sativa]
GI:15231055 RefSeq XP_010487984.1 354 PREDICTED: geranylgeranyl pyrophosphate synthase 10, mitochondrial isoform X1 [Camelina sativa]