Gene/Proteome Database (LMPD)

LMPD ID
LMP011453
Gene ID
831919
Species
Arabidopsis thaliana (Arabidopsis)
Gene Name
zinc finger protein JACKDAW
Gene Symbol
JKD
Synonyms
F15A17.180; F15A17_180; JACKDAW; JKD
Alternate Names
zinc finger protein JACKDAW
Chromosome
5

Proteins

zinc finger protein JACKDAW
Refseq ID NP_195935
Protein GI 30679912
UniProt ID Q700D2
mRNA ID NM_120393
Length 503
RefSeq Status REVIEWED
MQMIPGDPFSISSSMGGFVHQETHLHHLQQQIPDLNPNSNPNPNAKPNSSSAKKKRNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGARMSSLSNNNPVISTTNLNFGNESNVMNNPNLPHGFVHRGVHHPDINAAISQFGLGFGHDLSAMHAQGLSEMVQMASTGNHHLFPSSSSSLPDFSGHHQFQIPMTSTNPSLTLSSSSTSQQTSASLQHQTLKDSSFSPLFSSSSENKQNKPLSPMSATALLQKAAQMGSTRSNSSTAPSFFAGPTMTSSSATASPPPRSSSPMMIQQQLNNFNTNVLRENHNRAPPPLSGVSTSSVDNNPFQSNRSGLNPAQQMGLTRDFLGVSNEHHPHQTGRRPFLPQELARFAPLG

Gene Information

Entrez Gene ID
831919
Gene Name
zinc finger protein JACKDAW
Gene Symbol
JKD
Species
Arabidopsis thaliana

Gene Ontology (GO Annotations)

GO ID Source Type Description
GO:0005634 IEA:UniProtKB-KW C nucleus
GO:0003677 IEA:UniProtKB-KW F DNA binding
GO:0046872 IEA:UniProtKB-KW F metal ion binding
GO:0042803 IPI:TAIR F protein homodimerization activity
GO:0003700 ISS:TAIR F sequence-specific DNA binding transcription factor activity
GO:0051302 IMP:TAIR P regulation of cell division
GO:0045604 IMP:TAIR P regulation of epidermal cell differentiation
GO:0010075 IMP:TAIR P regulation of meristem growth
GO:0006355 TAS:TAIR P regulation of transcription, DNA-templated
GO:0048364 IMP:TAIR P root development
GO:0006351 IEA:UniProtKB-KW P transcription, DNA-templated

Domain Information

InterPro Annotations

Accession Description
IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
IPR007087 Zinc finger, C2H2
IPR015880 Zinc finger, C2H2-like

UniProt Annotations

Entry Information

Gene Name
zinc finger protein JACKDAW
Protein Entry
JKD_ARATH
UniProt ID
Q700D2
Species
Arabidopsis

Comments

Comment Type Description
Developmental Stage Start to accumulate during the 16- to 32-cell stage of embryogenesis. {ECO:0000269|PubMed:17785527}.
Function Probable transcription factor that regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action. Required for radial patterning and stem cell maintenance. Counteracted by 'MAGPIE' (MGP). {ECO:0000269|PubMed:17785527}.
Interaction Q9ZWA6:MGP; NbExp=3; IntAct=EBI-1568562, EBI-1568600;
Miscellaneous Early initiation of expression in ground tissue is SHR- and SCR-independent but later maintenance becomes dependent on both.
Sequence Caution Sequence=BAB08375.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAB86082.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
Similarity Contains 2 C2H2-type zinc fingers. {ECO:0000255|PROSITE-ProRule:PRU00042}.
Subcellular Location Nucleus {ECO:0000269|PubMed:17785527}.
Subunit Interacts with SHR, SCR, MGP and itself. {ECO:0000269|PubMed:17785527}.
Tissue Specificity Expressed in the quiescent center, the ground tissue stem cells and to a lesser extent in mature cortex and endodermis cells. {ECO:0000269|PubMed:17785527}.

Identical and Related Proteins

Unique RefSeq proteins for LMP011453 (as displayed in Record Overview)

Protein GI Database Accession Length Protein Name
30679912 RefSeq NP_195935 503 zinc finger protein JACKDAW

Identical Sequences to LMP011453 proteins

Reference Database Accession Length Protein Name
GI:30679912 EMBL CAF18563.1 503 ID1-like zinc finger protein 3 [Arabidopsis thaliana]
GI:30679912 EMBL CAG25866.1 503 hypothetical protein [Arabidopsis thaliana]
GI:30679912 GenBank AAS79555.1 503 C2H2 type zinc finger family protein [Arabidopsis thaliana]
GI:30679912 gnl TAIR 503 zinc finger protein JACKDAW [Arabidopsis thaliana]
GI:30679912 SwissProt Q700D2.1 503 RecName: Full=Zinc finger protein JACKDAW; AltName: Full=ID1-like zinc finger protein 3 [Arabidopsis thaliana]

Related Sequences to LMP011453 proteins

Reference Database Accession Length Protein Name
GI:30679912 DBBJ BAF00785.1 497 hypothetical protein, partial [Arabidopsis thaliana]
GI:30679912 EMBL CAB86082.1 501 putative protein [Arabidopsis thaliana]
GI:30679912 GenBank ACX20663.1 501 Sequence 49272 from patent US 7569389
GI:30679912 GenBank EFH47274.1 505 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]
GI:30679912 RefSeq XP_002871015.1 505 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]
GI:30679912 RefSeq XP_010490783.1 512 PREDICTED: zinc finger protein JACKDAW [Camelina sativa]