Structure Database (LMSD)
Common Name
P-LGD2-PC
Systematic Name
1-hexadecanoyl-2-(9,10-seco-9,11-dioxo-15-hydroxy-5Z,13E-prostadienoyl)-sn-glycero-phosphocholine
Synonyms
- -
LM ID
LMGP20010050
Formula
Exact Mass
Calculate m/z
829.546902
Sum Composition
Status
Active
3D model of P-LGD2-PC
Please note: Where there are chiral atoms but the stereochemistry is undefined, the 3D model takes an arbitrary conformation
Classification
References
String Representations
InChiKey (Click to copy)
CIZJGRKAYDGGIP-SVCIMYNVSA-N
InChi (Click to copy)
InChI=1S/C44H80NO11P/c1-7-9-11-12-13-14-15-16-17-18-19-20-25-29-43(49)53-36-41(37-55-57(51,52)54-34-33-45(4,5)6)56-44(50)30-26-22-21-24-27-39(35-46)42(38(3)47)32-31-40(48)28-23-10-8-2/h21,24,31-32,35,39-42,48H,7-20,22-23,25-30,33-34,36-37H2,1-6H3/b24-21-,32-31+/t39?,40?,41-,42?/m1/s1
SMILES (Click to copy)
[C@](COP(=O)([O-])OCC[N+](C)(C)C)([H])(OC(CCC/C=C\CC(C=O)C(/C=C/C(O)CCCCC)C(C)=O)=O)COC(CCCCCCCCCCCCCCC)=O
Other Databases
PubChem CID
Calculated Physicochemical Properties
Heavy Atoms
57
Rings
0
Aromatic Rings
0
Rotatable Bonds
41
Van der Waals Molecular Volume
881.44
Topological Polar Surface Area
165.56
Hydrogen Bond Donors
1
Hydrogen Bond Acceptors
12
logP
10.48
Molar Refractivity
227.17
Admin
Created at
-
Updated at
8th Nov 2024
LIPID MAPS® abbreviations for glycerophospholipids (GP)
The LIPID MAPS® glycerophospholipid abbreviations (PC, PE, etc.) are used here to refer to species with one or two radyl side-chains where the structures of the side chains are indicated within parentheses in the 'Headgroup(sn1/sn2)' format (e.g. PC(16:0/18:1(9Z)). By default, R stereochemistry at the C-2 carbon of glycerol and attachment of the headgroup at the sn3 position is assumed. Also, acyl chains are assumed by default. The 'O-' prefix is used to indicate the presence of an alkyl ether substituent e.g. PC(O-16:0/18:1(9Z)), whereas the 'P-' prefix is used for the 1Z-alkenyl ether (Plasmalogen) substituent e.g. PC(P-16:0/18:1(9Z)).
For molecules with opposite (S) stereochemistry at C2 of the glycerol group and attachment of the headgroup at the sn1 position, the stereochemistry specification of [S] is appended to the abbreviation. The 'Headgroup(sn3/sn2)' abbreviation format is used.
For molecules with unknown stereochemistry at the C-2 carbon of the glycerol group, the stereochemistry specification of [U] is appended to the abbreviation and the structure is drawn with C-2 stereochemistry unspecified.
The LIPID MAPS® glycerophospholipid abbreviations (PC, PE, etc.) are used here to refer to species with one or two radyl side-chains where the structures of the side chains are indicated within parentheses in the 'Headgroup(sn1/sn2)' format (e.g. PC(16:0/18:1(9Z)). By default, R stereochemistry at the C-2 carbon of glycerol and attachment of the headgroup at the sn3 position is assumed. Also, acyl chains are assumed by default. The 'O-' prefix is used to indicate the presence of an alkyl ether substituent e.g. PC(O-16:0/18:1(9Z)), whereas the 'P-' prefix is used for the 1Z-alkenyl ether (Plasmalogen) substituent e.g. PC(P-16:0/18:1(9Z)).
For molecules with opposite (S) stereochemistry at C2 of the glycerol group and attachment of the headgroup at the sn1 position, the stereochemistry specification of [S] is appended to the abbreviation. The 'Headgroup(sn3/sn2)' abbreviation format is used.
For molecules with unknown stereochemistry at the C-2 carbon of the glycerol group, the stereochemistry specification of [U] is appended to the abbreviation and the structure is drawn with C-2 stereochemistry unspecified.