Structure Database (LMSD)
Common Name
Epoxybergamottin
Systematic Name
Synonyms
3D model of Epoxybergamottin
Please note: Where there are chiral atoms but the stereochemistry is undefined, the 3D model takes an arbitrary conformation
Classification
Biological Context
6'7'-Epoxybergamottin is a furanocoumarin found in grapefruit.1 It is a potent inhibitor of the cytochrome P450 (CYP) isoform CYP3A4 with an IC50 value of 0.30 ppm in a cell-free assay, 0.33 µM in HL7 human liver cells, and 0.22 µM in S9 human intestine cells.2 It has been studied in the context of drug interactions with grapefruit constituents. It is found in grapefruit juice at concentrations of 0.1-7.4 µM and inhibits the transport of talinolol , a permeability glycoprotein (P-gp/ABCB1) transporter substrate, across Caco-2 cell monolayers (IC50 = 0.7 µM).3
This information has been provided by Cayman Chemical
References
2. Manthey, J.A., Myung, K., Mertens-Talcott, S., et al. The isolation of minor-occurring furano coumarins in grapefruit and analysis of their inhibition of CUP 2A4 and P-Glycoprotein transport of talinolol from caco-2 cells. Proc. Fla. State Hort. Soc. 119, 361-366 (2006).
3. de Castro, W.V., Mertens-Talcott, S., Derendorf, H., et al. Grapefruit juice-drug interactions: Grapefruit juice and its components inhibit P-glycoprotein (ABCB1) mediated transport of talinolol in Caco-2 cells. J. Pharm. Sci. 96(10), 2808-2817 (2007).
References
Taxonomy Information
Curated from
NCBI taxonomy class
Reference
Citrus x paradisi
(#37656)
Magnoliopsida
(#3398)
Identification of epoxybergamottin as a CYP3A4 inhibitor in grapefruit peel.,
Eur J Clin Pharmacol, 2003
Eur J Clin Pharmacol, 2003
Pubmed ID:
12610742
Citrus x paradisi
(#37656)
Magnoliopsida
(#3398)
Distribution of furanocoumarins in grapefruit juice fractions.,
J Agric Food Chem, 2005
J Agric Food Chem, 2005
Pubmed ID:
15969491
String Representations
InChiKey (Click to copy)
OOKSPQLCQUBEKU-MDWZMJQESA-N
InChi (Click to copy)
InChI=1S/C21H22O5/c1-13(4-6-18-21(2,3)26-18)8-10-24-20-14-5-7-19(22)25-17(14)12-16-15(20)9-11-23-16/h5,7-9,11-12,18H,4,6,10H2,1-3H3/b13-8+
SMILES (Click to copy)
C1(OC/C=C(/CCC2OC2(C)C)\C)=C2C(OC(=O)C=C2)=CC2=C1C=CO2
Other Databases
Calculated Physicochemical Properties
Heavy Atoms
26
Rings
4
Aromatic Rings
3
Rotatable Bonds
6
Van der Waals Molecular Volume
315.19
Topological Polar Surface Area
65.11
Hydrogen Bond Donors
0
Hydrogen Bond Acceptors
5
logP
6.58
Molar Refractivity
101.32
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Created at
-
Updated at
14th Jun 2021