Structure Database (LMSD)

Common Name
2-Isopentenyl-3,4-dehydrorhodopin
Systematic Name
(2S)-2-(3-Methylbut-2-enyl)-3,4-didehydro-1,2-dihydro-psi,psi-caroten-1-ol
Synonyms
  • Isopentenyldehydrorhodopin
LM ID
LMPR01080010
Formula
Exact Mass
Calculate m/z
620.495715
Status
Active

Classification

References

Comments
Imported from http://carotenoiddb.jp/

Taxonomy Information

Curated from
NCBI taxonomy class
Reference
Haloarcula japonica (#29282)
Halobacteria (#183963)
Complete biosynthetic pathway of the C50 carotenoid bacterioruberin from lycopene in the extremely halophilic archaeon Haloarcula japonica.,
J Bacteriol, 2015
Pubmed ID: 25712483

String Representations

InChiKey (Click to copy)
KMABSCJZIWNFFA-MBGUUZMHSA-N
InChi (Click to copy)
InChI=1S/C45H64O/c1-36(2)20-15-23-40(7)26-18-29-41(8)27-16-24-38(5)21-13-14-22-39(6)25-17-28-42(9)30-19-31-43(10)33-35-44(45(11,12)46)34-32-37(3)4/h13-14,16-22,24-33,35,44,46H,15,23,34H2,1-12H3/b14-13+,24-16+,25-17+,29-18+,30-19+,35-33+,38-21+,39-22+,40-26+,41-27+,42-28+,43-31+/t44-/m0/s1
SMILES (Click to copy)
C(=C(/C)\C=C\[C@H](C/C=C(/C)\C)C(C)(C)O)/C=C/C(/C)=C/C=C/C(/C)=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C/C=C(\C)/CC/C=C(\C)/C

Other Databases

CHEBI ID
PubChem CID
Carotenoid ID

Calculated Physicochemical Properties

Heavy Atoms 46
Rings
Aromatic Rings
Rotatable Bonds 18
Van der Waals Molecular Volume 758.89
Topological Polar Surface Area 20.23
Hydrogen Bond Donors 1
Hydrogen Bond Acceptors 1
logP 13.78
Molar Refractivity 210.39

Admin

Created at
17th Nov 2021
Updated at
3rd Dec 2021