Structure Database (LMSD)
Common Name
Sphingosine-1-phosphocholine
Systematic Name
Sphing-4-enine-1-phosphocholine
Synonyms
- SM(d18:1/0:0)
LM ID
LMSP01060001
Formula
Exact Mass
Calculate m/z
464.337911
Sum Composition
Status
Curated
3D model of Sphingosine-1-phosphocholine
Please note: Where there are chiral atoms but the stereochemistry is undefined, the 3D model takes an arbitrary conformation
Classification
Category
Main Class
Sub Class
Biological Context
D-erythro Lysosphingomyelin is a bioactive sphingolipid.1 It is an agonist of sphingosine-1-phosphate receptor 1 (S1P1), S1P2, and S1P3 (EC50s = 167.7, 368.1, and 482.6 nM, respectively, for the human receptors). D-erythro Lysosphingomyelin is also an agonist of the orphan receptor ovarian cancer G protein-coupled receptor 1 (ORG1) that induces calcium accumulation in cells overexpressing OGR1 (EC50 = ~35 nM).2 Levels of D-erythro lysosphingomyelin are increased in skin isolated from patients with atopic dermatitis, as well as postmortem brain from patients with Niemann-Pick disease type A, but not type B.3,4 As this product is derived from a natural source, there may be variations in the sphingoid backbone. [Matreya, LLC. Catalog No. 1318]
This information has been provided by Cayman Chemical
References
1. Nixon, G.F., Mathieson, F.A., and Hunter, I. The multi-functional role of sphingosylphosphorylcholine. Prog. Lipid Res. 47(1), 62-75 (2008).
2. Im, D.-S., Clemens, J., Macdonald, T.L., et al. Characterization of the human and mouse sphingosine 1-phosphate receptor, S1P5 (Edg-8): Structure-activity relationship of sphingosine1-phosphate receptors. Biochemistry 40(46), 14053-14060 (2001).
String Representations
InChiKey (Click to copy)
JLVSPVFPBBFMBE-HXSWCURESA-N
InChi (Click to copy)
InChI=1S/C23H49N2O5P/c1-5-6-7-8-9-10-11-12-13-14-15-16-17-18-23(26)22(24)21-30-31(27,28)29-20-19-25(2,3)4/h17-18,22-23,26H,5-16,19-21,24H2,1-4H3/b18-17+/t22-,23+/m0/s1
SMILES (Click to copy)
[C@](COP(=O)([O-])OCC[N+](C)(C)C)([H])(N)[C@]([H])(O)/C=C/CCCCCCCCCCCCC
Other Databases
Calculated Physicochemical Properties
Heavy Atoms
31
Rings
0
Aromatic Rings
0
Rotatable Bonds
21
Van der Waals Molecular Volume
489.60
Topological Polar Surface Area
104.84
Hydrogen Bond Donors
2
Hydrogen Bond Acceptors
6
logP
5.57
Molar Refractivity
129.10
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