Structure Database (LMSD)

Common Name
Spisulosine
Systematic Name
1-deoxy-sphinganine
Synonyms
  • (2S,3R)-2-aminooctadecan-3-ol
  • 2S-amino-octadecan-3R-ol
LM ID
LMSP01080032
Formula
Exact Mass
Calculate m/z
285.303164
Status
Curated


Classification

Biological Context

1-Deoxysphinganine is an atypical sphingolipid that lacks the C1-hydroxyl group of canonical sphinganine and is formed when serine palmitoyltransferase condenses palmitoyl-CoA with alanine instead of serine during sphingolipid synthesis.1 Plasma levels of 1-deoxysphinganine are increased in patients with hereditary sensory and autonomic neuropathy type 1 (HSAN1), an inherited neuropathy associated with serine palmitoyltransferase gene mutations, and in patients with glycogen storage disease type I (GSDI).2,3 Deoxysphingolipids, including 1-deoxysphinganine, are not converted to canonical sphingolipids or fatty acids and accumulate in cells, particularly in the mitochondria where 1-deoxysphinganine induces mitochondrial fragmentation and dysfunction.4 It also accumulates in LLC-PK1 cells and in mouse liver and kidney following application or administration, respectively, of the ceramide synthase inhibitor fumonisin B1 .1 1-Deoxysphinganine is neurotoxic to dorsal root ganglion neurons in vitro, decreasing neurite length and inducing neurite contraction when used at a concentration 1 µM.2 It is cytotoxic to DU145 cells (IC50 = ~2 µM) but stimulates DNA synthesis in Swiss 3T3 cells when used at a concentration of 1 µM.1,5

This information has been provided by Cayman Chemical

References

1. Zitomer, N.C., Mitchell, T., Voss, K.A., et al. Ceramide synthase inhibition by fumonisin B1 causes accumulation of 1-deoxysphinganine. A novel category of bioactive 1-deoxysphingoid bases and 1-deoxydihydroceramides biosynthesized by mammalian cell lines and animals. The Journal of Biological Chemisty 284(8), 4786-4795 (2009).
2. Schroeder, J.J., Crane, H.M., Xia, J., et al. Disruption of sphingolipid metabolism and stimulation of DNA synthesis by fumonisin B1. A molecular mechanism for carcinogenesis associated with Fusarium moniliforme. The Journal of Biological Chemisty 269(5), 3475-3481 (1994).
5. Penno, A., Reilly, M.M., Houlden, H., et al. Hereditary sensory neuropathy type 1 is caused by the accumulation of two neurotoxic sphingolipids. The Journal of Biological Chemisty 285(15), 11178-11187 (2010).

References

Taxonomy Information

Curated from
NCBI taxonomy class
Reference
Homo sapiens (#9606)
Mammalia (#40674)
Ceramide synthase inhibition by fumonisin B1 causes accumulation of 1-deoxysphinganine: a novel category of bioactive 1-deoxysphingoid bases and 1-deoxydihydroceramides biosynthesized by mammalian cell lines and animals.,
J Biol Chem, 2009
Pubmed ID: 19095642

String Representations

InChiKey (Click to copy)
YRYJJIXWWQLGGV-ZWKOTPCHSA-N
InChi (Click to copy)
InChI=1S/C18H39NO/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-18(20)17(2)19/h17-18,20H,3-16,19H2,1-2H3/t17-,18+/m0/s1
SMILES (Click to copy)
C[C@H](N)[C@H](O)CCCCCCCCCCCCCCC

Other Databases

CHEBI ID
PubChem CID
SwissLipids ID
Cayman ID

Calculated Physicochemical Properties

Heavy Atoms 20
Rings 0
Aromatic Rings 0
Rotatable Bonds 15
Van der Waals Molecular Volume 339.75
Topological Polar Surface Area 46.25
Hydrogen Bond Donors 2
Hydrogen Bond Acceptors 2
logP 5.75
Molar Refractivity 90.99

Admin

Created at
-
Updated at
-