Structure Database (LMSD)

OH H NH OH OH H OH O
Common Name
Cer(t18:0/20:0(2OH))
Systematic Name
N-(2-hydroxyeicosanoyl)-4R-hydroxysphinganine
Synonyms
  • N-(2-hydroxyeicosanoyl)-hydroxysphinganine
  • Cer[AP]
LM ID
LMSP02030017
Formula
C38H77NO5
Exact Mass
Calculate m/z
627.580174
Sum Composition
Cer 38:0;O4
Abbrev Chains
Cer 18:0;O3/20:0;O
Status
Active
Show lipids differing only in stereochemistry/bond geometry

Main

Classification

Category
Main Class
Sub Class
Sphingolipids [SP]
Ceramides [SP02]
N-acyl-4-hydroxysphinganines (phytoceramides) [SP0203]

String Representations

InChiKey (Click to copy)
RYCCNLKFNBMCIU-FXKDJHKMSA-N
InChi (Click to copy)
InChI=1S/C38H77NO5/c1-3-5-7-9-11-13-15-17-18-19-20-22-24-26-28-30-32-36(42)38(44)39-34(33-40)37(43)35(41)31-29-27-25-23-21-16-14-12-10-8-6-4-2/h34-37,40-43H,3-33H2,1-2H3,(H,39,44)/t34-,35+,36?,37-/m0/s1
SMILES (Click to copy)
[C@](CO)([H])(NC(C(O)CCCCCCCCCCCCCCCCCC)=O)[C@]([H])(O)[C@H](O)CCCCCCCCCCCCCC

References

Taxonomy Information

Curated from
NCBI taxonomy class
Reference
Saccharomyces cerevisiae (#4932)
Saccharomycetes (#4891)
Mass spectrometry-based profiling of phospholipids and sphingolipids in extracts from Saccharomyces cerevisiae.,
Yeast, 2006
Pubmed ID: 16652392

Other Databases

CHEBI ID
67030
PubChem CID
70678864
SwissLipids ID
SLM:000508890

Calculated Physicochemical Properties

Heavy Atoms 44
Rings 0
Aromatic Rings 0
Rotatable Bonds 35
Van der Waals Molecular Volume 718.27
Topological Polar Surface Area 110.02
Hydrogen Bond Donors 5
Hydrogen Bond Acceptors 5
logP 10.72
Molar Refractivity 189.43

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Created at
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Updated at
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