Structure Database (LMSD)

Common Name
GlcCer(d18:2(4E,8Z)/16:0(2OH[S]))
Systematic Name
N-(2R-hydroxyhexadecanoyl)-1-β-glucosyl-4E,8Z-sphingadienine
Synonyms
  • GlcCer(d18:2(4E,8Z)/16:0(2OH[S]))
  • 1-O-beta-D-glucopyranosyl-(2S,3R,4E,8Z)-2-[(2R)-2-hydroxyhexadecanoylamino]-4,8-octadecadiene-1,3-diol
LM ID
LMSP05010087
Formula
Exact Mass
Calculate m/z
713.544184
Sum Composition
Abbrev Chains
GlcCer 18:2;O2/16:0;O
Status
Active

Classification

References

Taxonomy Information

Curated from
NCBI taxonomy class
Reference
Prunus dulcis (#3755)
Magnoliopsida (#3398)
Sphingolipid and other constituents from almond nuts (Prunus amygdalus Batsch).,
J Agric Food Chem, 2002
Pubmed ID: 12137501

String Representations

InChiKey (Click to copy)
HOMYIYLRRDTKAA-GMZRZXGTSA-N
InChi (Click to copy)
InChI=1S/C40H75NO9/c1-3-5-7-9-11-13-15-17-19-20-22-24-26-28-33(43)32(31-49-40-38(47)37(46)36(45)35(30-42)50-40)41-39(48)34(44)29-27-25-23-21-18-16-14-12-10-8-6-4-2/h19-20,26,28,32-38,40,42-47H,3-18,21-25,27,29-31H2,1-2H3,(H,41,48)/b20-19-,28-26+/t32-,33+,34-,35+,36+,37-,38+,40+/m0/s1
SMILES (Click to copy)
[C@](CO[C@H]1[C@H](O)[C@@H](O)[C@H](O)[C@@H](CO)O1)([H])(NC([C@@H](O)CCCCCCCCCCCCCC)=O)[C@]([H])(O)/C=C/CC/C=C\CCCCCCCCC

Other Databases

PubChem CID

Calculated Physicochemical Properties

Heavy Atoms 50
Rings 1
Aromatic Rings 0
Rotatable Bonds 32
Van der Waals Molecular Volume 770.39
Topological Polar Surface Area 171.01
Hydrogen Bond Donors 7
Hydrogen Bond Acceptors 10
logP 8.99
Molar Refractivity 204.56

Admin

Created at
13th Mar 2020
Updated at
1st Feb 2021