Structure Database (LMSD)
Common Name
GlcCer(d17:2(4E,8E)(9Me)/16:0)
Systematic Name
N-(hexadecanoyl)-1-α-glucosyl-9-methyl-4E,8E-heptadecasphingadienine
Synonyms
- Thraustochytroside C
LM ID
LMSP05010089
Formula
Exact Mass
Calculate m/z
697.549269
Sum Composition
Abbrev Chains
GlcCer 18:2;O2/16:0
Status
Active
3D model of GlcCer(d17:2(4E,8E)(9Me)/16:0)
Please note: Where there are chiral atoms but the stereochemistry is undefined, the 3D model takes an arbitrary conformation
Classification
Category
Main Class
Sub Class
References
Taxonomy Information
Curated from
NCBI taxonomy class
Reference
Monorhizochytrium globosum
(#1884240)
Bigyra
(#2683628)
Thraustochytrosides A-C: new glycosphingolipids from a unique marine protist, Thraustochytrium globosum,
Tetrahedron Letts, 1999
Tetrahedron Letts, 1999
String Representations
InChiKey (Click to copy)
NPAVSQAMXNSXEQ-UEQHGHTISA-N
InChi (Click to copy)
InChI=1S/C40H75NO8/c1-4-6-8-10-12-13-14-15-16-17-18-20-25-29-36(44)41-33(31-48-40-39(47)38(46)37(45)35(30-42)49-40)34(43)28-24-21-23-27-32(3)26-22-19-11-9-7-5-2/h24,27-28,33-35,37-40,42-43,45-47H,4-23,25-26,29-31H2,1-3H3,(H,41,44)/b28-24+,32-27+/t33-,34+,35+,37+,38-,39+,40+/m0/s1
SMILES (Click to copy)
[C@](CO[C@H]1[C@H](O)[C@@H](O)[C@H](O)[C@@H](CO)O1)([H])(NC(CCCCCCCCCCCCCCC)=O)[C@]([H])(O)/C=C/CC/C=C(\C)/CCCCCCCC
Other Databases
PubChem CID
Calculated Physicochemical Properties
Heavy Atoms
49
Rings
1
Aromatic Rings
0
Rotatable Bonds
31
Van der Waals Molecular Volume
761.60
Topological Polar Surface Area
150.78
Hydrogen Bond Donors
6
Hydrogen Bond Acceptors
9
logP
9.74
Molar Refractivity
202.66
Admin
Created at
4th May 2020
Updated at
26th Jul 2021