Structure Database (LMSD)

Common Name
Gypenoside S2
Systematic Name
3β,20S,21-trihydroxy-25-methoxydammar-23-ene-12-one-3-O-{[α-l-rhamnopyranosyl(1-2)]-[β-d-xylopyranosyl(1-3)]-α-l-arabinopyranosyl}-21-O-β-d-glucopyranoside
Synonyms
LM ID
LMPR0106080007
Formula
Exact Mass
Calculate m/z
1076.57673
Status
Active

Classification

References

Taxonomy Information

Curated from
NCBI taxonomy class
Reference
Gynostemma pentaphyllum (#182084)
Magnoliopsida (#3398)
Protective effects of four new saponins from Gynostemma pentaphyllum against hydrogen peroxide-induced neurotoxicity in SH-SY5Y cells.,
Bioorg Chem, 2020
Pubmed ID: 33213892

String Representations

InChiKey (Click to copy)
LZVHXQPFPKIRNH-RBQSPAAFSA-N
InChi (Click to copy)
InChI=1S/C53H88O22/c1-24-34(58)37(61)41(65)46(71-24)75-43-42(74-44-39(63)35(59)27(56)21-68-44)28(57)22-69-47(43)73-32-13-16-50(6)30(49(32,4)5)12-18-51(7)31(50)19-26(55)33-25(11-17-52(33,51)8)53(66,15-10-14-48(2,3)67-9)23-70-45-40(64)38(62)36(60)29(20-54)72-45/h10,14,24-25,27-47,54,56-66H,11-13,15-23H2,1-9H3/b14-10+/t24-,25-,27+,28-,29+,30-,31+,32-,33-,34-,35-,36+,37+,38-,39+,40+,41+,42-,43+,44-,45+,46-,47-,50-,51+,52+,53+/m0/s1
SMILES (Click to copy)
C1C[C@]2(C)[C@@]3([H])CC(=O)[C@]4([H])[C@@]([H])([C@@](CO[C@H]5[C@H](O)[C@@H](O)[C@@H]([C@@H](CO)O5)O)(O)C/C=C/C(OC)(C)C)CC[C@@]4(C)[C@]3(C)CC[C@@]2([H])C(C)(C)[C@H]1O[C@@H]1OC[C@H](O)[C@H](O[C@H]2[C@H](O)[C@@H](O)[C@H](O)CO2)[C@H]1O[C@H]1[C@H](O)[C@H](O)[C@@H](O)[C@H](C)O1

Other Databases

PubChem CID

Calculated Physicochemical Properties

Heavy Atoms 75
Rings 8
Aromatic Rings 0
Rotatable Bonds 15
Van der Waals Molecular Volume 1014.68
Topological Polar Surface Area 351.18
Hydrogen Bond Donors 12
Hydrogen Bond Acceptors 22
logP 6.06
Molar Refractivity 272.10

Admin

Created at
15th Dec 2020
Updated at
15th Dec 2020