Lipid Mini-On
Lipid mining and ontology generation
Description
Lipid Mini-On enables the exploration the molecular structural properties enriched in lipidomics datasets. The tool uses a text-mining strategy to generate a wide variety of ontology terms from the LIPID MAPS common name. Using the Lipid Ontology terms generated, Lipid Mini-On performs enrichment analyses highlighting the common physicochemical characteristics existing in lipidomics datasets. It performs enrichment analysis using popular enrichment statistics (e.g., EASE, Fisher’s exact test, hypergeometric, binomial, and Kolmogorov-Smirnov’s test). Its graphical interface generates a variety of high-quality browsable and exportable figures from the Lipid Ontology enrichments.
Technical Information
Publications:
PMID:30977807
Training datasets:
Documentation and user guide:
Download / Web-service link:
Programming languages:
R
Platforms:
Windows,
Linux,
MacOS
Output formats:
CSV,
TXT,
PNG,
PDF
For the R package
Input formats:
CSV,
TXT
Web platform:
Yes
Desktop client:
No
CLI:
No
GUI:
Yes
License:
BSD-2
Tasks
7.2)
Lipid ontology enrichment analysis
Other features:
NA
Analysis:
Enrichment analysis
Ontology terms:
Classification (category – class – subclass, based on LIPID MAPS classification),
Fatty acid chain,
Fatty acid length,
Fatty acid saturation
Input style:
LIPID MAPS common names