MetaboLights

Resource for Metabolomics experiments and derived information

Description

MetaboLights is a resource for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments. MetaboLights is the recommended Metabolomics repository for a number of leading journals and Elixir. We collaborate closely with major parties in world-wide metabolomics communities, such as the Metabolomics Society and the associated Metabolomics Standards Initiative (MSI).

Technical Information

Publications:

PMID 31691833

Documentation and user guide:

Yes

Download / Web-service link:

Yes

Source code repository:

Yes

Programming languages:

Java,

Python

API Access:

Yes

Platforms:

Platform-independent

Output formats:

SDF,

TSV,

SQL,

Molfile,

XML

Input formats:

TXT,

TSV,

Raw data

Web platform:

Yes

Desktop client:

CLI:

Yes

GUI:

Yes

License:

All data is governed by the EMBL-EBI's Terms of use and all code is licensed under Apache 2.0.

Tasks

2) Lipidomics data repositories

Covered organisms:

6285 different organisms with 30% of studies from human, mouse and rat

Number of datasets:

2695

Processed data:

Yes

Raw data:

Yes

Experimental metadata:

Yes

Guided submission tool interface:

Yes

Dataset curation:

Yes

Analyses types:

MS and NMR data