Structure Database (LMSD)

Common Name
Protectin DX
Systematic Name
10S,17S-dihydroxy-4Z,7Z,11E,13Z,15E,19Z-docosahexaenoic acid
Synonyms
  • PDX
  • 10S,17S-DiHDoHE
  • 10S,17S-diHDHA
LM ID
LMFA04040003
Formula
Exact Mass
Calculate m/z
360.23006
Sum Composition
Status
Curated

Classification

Biological Context

10(S),17(S)-DiHDHA is a DHA metabolite, also referred to as protectin DX (PDX).1 It is produced by an apparent double lipoxygenase (LO)-mediated reaction in murine peritonitis exudates, in suspensions of human leukocytes, or by soybean 15-LO incubated with DHA.2,1 It differs from protectin D1 with respect to the stereochemistry of the C-10 hydroxyl and the double bond configuration at the 13 and 15 positions. 10(S),17(S)-DiHDHA blocks neutrophil infiltration in murine peritonitis by 20-25% at a dose of 1 ng/mouse.2 It also inhibits platelet activation by both impairing thromboxane (TX) synthesis and TX receptor activation.1,3

This information has been provided by Cayman Chemical

References

3. Chen, P., Véricel, E., Lagarde, M., et al. Poxytrins, a class of oxygenated products from polyunsaturated fatty acids, potently inhibit blood platelet aggregation. FASEB J. 25, 382-388 (2011).

References

Taxonomy Information

Curated from
NCBI taxonomy class
Reference
Homo sapiens (#9606)
Mammalia (#40674)
Characterization and biological effects of di-hydroxylated compounds deriving from the lipoxygenation of ALA.,
J Lipid Res, 2013
Pubmed ID: 23740966
Glycine max (#3847)
Magnoliopsida (#3398)
Full characterization of PDX, a neuroprotectin/protectin D1 isomer, which inhibits blood platelet aggregation.,
FEBS Lett, 2009
Pubmed ID: 19818771

String Representations

InChiKey (Click to copy)
CRDZYJSQHCXHEG-XLBFCUQGSA-N
InChi (Click to copy)
InChI=1S/C22H32O4/c1-2-3-10-15-20(23)17-12-8-9-13-18-21(24)16-11-6-4-5-7-14-19-22(25)26/h3,5-13,17-18,20-21,23-24H,2,4,14-16,19H2,1H3,(H,25,26)/b7-5-,9-8-,10-3-,11-6-,17-12+,18-13+/t20-,21-/m0/s1
SMILES (Click to copy)
C(CC/C=C\C/C=C\C[C@H](O)/C=C/C=C\C=C\[C@@H](O)C/C=C\CC)(=O)O

Other Databases

CHEBI ID
PubChem CID
Cayman ID

Calculated Physicochemical Properties

Heavy Atoms 26
Rings 0
Aromatic Rings 0
Rotatable Bonds 14
Van der Waals Molecular Volume 405.84
Topological Polar Surface Area 77.76
Hydrogen Bond Donors 3
Hydrogen Bond Acceptors 4
logP 5.06
Molar Refractivity 108.89

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Created at
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Updated at
27th Jan 2022