Structure database (LMSD)

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LM IDLMGP20010006
Common NamePC(16:0/5:0(COOH))
Systematic Name1-hexadecanoyl-2-glutaroyl-sn-glycero-3-phosphocholine
Synonyms1-Palmitoyl-2-glutaroyl-sn-glycero-3-phosphorylcholine; PGPC
Exact Mass
609.3642 (neutral)    Calculate m/z:
FormulaC29H56NO10P
CategoryGlycerophospholipids [GP]
Main ClassOxidized glycerophospholipids [GP20]
Sub ClassOxidized glycerophosphocholines [GP2001]
PubChem CID46907872
CHEBI ID61822
SWISSLIPIDS IDSLM:000389543
CAYMAN ID10044
InChIKeyCDZVJFRXJAUXPP-AREMUKBSSA-N  Show lipids differing only in stereochemistry/bond geometry
InChI
InChI=1S/C29H56NO10P/c1-5-6-7-8-9-10-11-12-13-14-15-16-17-20-28(33)37-24-26(40-29(34)21-18-19-27(31)32)25-39-41(35,36)38-23-22-30(2,3)4/h26H,5-25H2,1-4H3,(H-,31,32,35,36)/t26-/m1/s1
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SMILES
[C@](COP(=O)([O-])OCC[N+](C)(C)C)([H])(OC(CCCC(O)=O)=O)COC(CCCCCCCCCCCCCCC)=O
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StatusActive
Calculated physicochemical properties (?):
 Heavy Atoms41Rings0Aromatic Rings0Rotatable Bonds30
 van der Waals
Molecular Volume
621.07Topological Polar
Surface Area
148.49Hydrogen
Bond Donors
1Hydrogen
Bond Acceptors
11
 logP6.81Molar
Refractivity
157.52    
LIPID MAPS® abbreviations for glycerophospholipids (GP)

The LIPID MAPS® glycerophospholipid abbreviations (PC, PE, etc.) are used here to refer to species with one or two radyl side-chains where the structures of the side chains are indicated within parentheses in the 'Headgroup(sn1/sn2)' format (e.g. PC(16:0/18:1(9Z)). By default, R stereochemistry at the C-2 carbon of glycerol and attachment of the headgroup at the sn3 position is assumed. Also, acyl chains are assumed by default. The 'O-' prefix is used to indicate the presence of an alkyl ether substituent e.g. PC(O-16:0/18:1(9Z)), whereas the 'P-' prefix is used for the 1Z-alkenyl ether (Plasmalogen) substituent e.g. PC(P-16:0/18:1(9Z)).

For molecules with opposite (S) stereochemistry at C2 of the glycerol group and attachment of the headgroup at the sn1 position, the stereochemistry specification of [S] is appended to the abbreviation. The 'Headgroup(sn3/sn2)' abbreviation format is used.

For molecules with unknown stereochemistry at the C-2 carbon of the glycerol group, the stereochemistry specification of [U] is appended to the abbreviation and the structure is drawn with C-2 stereochemistry unspecified.