Structure Database (LMSD)

Common Name
Malvidin 3-O-beta-D-sambubioside
Systematic Name
3-[2-O-(β-D-Xylopyranosyl)-β-D-glucopyranosyloxy]-5,7-dihydroxy-2-(3,5-dimethoxy-4-hydroxyphenyl)-1-benzopyrylium
Synonyms
LM ID
LMPK12010395
Formula
Exact Mass
Calculate m/z
625.176865
Status
Curated

Classification

References

Taxonomy Information

Curated from
NCBI taxonomy class
Reference
Viridiplantae (#33090)
Flavonoid imported from http://metabolomics.jp/
Vaccinium padifolium (#180765)
Magnoliopsida (#3398)
Anthocyanins in blue berries of Vaccinium padifolium,
Phytochemistry, 1999

String Representations

InChiKey (Click to copy)
HJGHEPQTASNXPM-OPIYWAHHSA-O
InChi (Click to copy)
InChI=1S/C28H32O16/c1-38-16-3-10(4-17(39-2)21(16)34)25-18(7-12-13(31)5-11(30)6-15(12)41-25)42-28-26(23(36)22(35)19(8-29)43-28)44-27-24(37)20(33)14(32)9-40-27/h3-7,14,19-20,22-24,26-29,32-33,35-37H,8-9H2,1-2H3,(H2-,30,31,34)/p+1/t14-,19-,20+,22-,23+,24-,26-,27+,28-/m1/s1
SMILES (Click to copy)
C1(O)=CC(O)=CC2[O+]=C(C3C=C(OC)C(O)=C(OC)C=3)C(O[C@H]3[C@H](O[C@H]4[C@H](O)[C@@H](O)[C@H](O)CO4)[C@@H](O)[C@H](O)[C@@H](CO)O3)=CC1=2

Other Databases

METABOLOMICS ID
PubChem CID

Calculated Physicochemical Properties

Heavy Atoms 44
Rings 5
Aromatic Rings 3
Rotatable Bonds 8
Van der Waals Molecular Volume 519.30
Topological Polar Surface Area 252.89
Hydrogen Bond Donors 9
Hydrogen Bond Acceptors 16
logP 2.30
Molar Refractivity 150.77

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Created at
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Updated at
18th Nov 2024