Structure Database (LMSD)
Common Name
Phytosphingosine
Systematic Name
4R-hydroxysphinganine
Synonyms
- 4-hydroxysphinganine
LM ID
LMSP01030001
Formula
Exact Mass
Calculate m/z
317.292994
Sum Composition
Status
Curated
3D model of Phytosphingosine
Please note: Where there are chiral atoms but the stereochemistry is undefined, the 3D model takes an arbitrary conformation
Classification
Category
Main Class
Sub Class
Biological Context
Phytosphingosine is a sphingolipid with a hydroxyl group at the C4 position that is found mainly in fungi and plants but also in animals, including humans.1,2 It is metabolized to odd-numbered fatty acids with 2-hydroxy palmitic acid as an intermediate.3 Phytosphingosine dose-dependently induces cell death of CHO cells and inhibits carbachol-induced activation of phospholipase D (PLD) in CHO cells transfected with C. elegans muscarinic acetylcholine receptors.4 It is essential in the heat stress response in S. cerevisiae.5 [Matreya, LLC. Catalog No. 1330]
This information has been provided by Cayman Chemical
References
1. Hannun, Y.A., Luberto, C., and Argraves, K.M. Enzymes of sphingolipid metabolism: From modular to integrative signaling. Biochemistry 40(16), 4893-4903 (2001).
2. Kondo, N., Ohno, Y., Yamagata, M., et al. Identification of the phytosphingosine metabolic pathway leading to odd-numbered fatty acids. Nat. Commun. 5, 5338 (2014).
5. Schürer, N.Y., Plewig, G., and Elias, P.M. Stratum corneum lipid function. Dermatologica 183(2), 77-94 (1991).
String Representations
InChiKey (Click to copy)
AERBNCYCJBRYDG-KSZLIROESA-N
InChi (Click to copy)
InChI=1S/C18H39NO3/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-17(21)18(22)16(19)15-20/h16-18,20-22H,2-15,19H2,1H3/t16-,17+,18-/m0/s1
SMILES (Click to copy)
OC[C@]([H])(N)[C@]([H])(O)[C@@](O)([H])CCCCCCCCCCCCCC
Other Databases
KEGG ID
HMDB ID
CHEBI ID
PubChem CID
SwissLipids ID
Cayman ID
Calculated Physicochemical Properties
Heavy Atoms
22
Rings
0
Aromatic Rings
0
Rotatable Bonds
16
Van der Waals Molecular Volume
357.33
Topological Polar Surface Area
86.71
Hydrogen Bond Donors
4
Hydrogen Bond Acceptors
3
logP
4.26
Molar Refractivity
94.80
Admin
Created at
-
Updated at
-