Structure Database (LMSD)

Common Name
Phytosphingosine
Systematic Name
4R-hydroxysphinganine
Synonyms
  • 4-hydroxysphinganine
LM ID
LMSP01030001
Formula
Exact Mass
Calculate m/z
317.292994
Sum Composition
Status
Curated


Classification

Biological Context

Phytosphingosine is a sphingolipid with a hydroxyl group at the C4 position that is found mainly in fungi and plants but also in animals, including humans.1,2 It is metabolized to odd-numbered fatty acids with 2-hydroxy palmitic acid as an intermediate.3 Phytosphingosine dose-dependently induces cell death of CHO cells and inhibits carbachol-induced activation of phospholipase D (PLD) in CHO cells transfected with C. elegans muscarinic acetylcholine receptors.4 It is essential in the heat stress response in S. cerevisiae.5 [Matreya, LLC. Catalog No. 1330]

This information has been provided by Cayman Chemical

References

1. Hannun, Y.A., Luberto, C., and Argraves, K.M. Enzymes of sphingolipid metabolism: From modular to integrative signaling. Biochemistry 40(16), 4893-4903 (2001).
2. Kondo, N., Ohno, Y., Yamagata, M., et al. Identification of the phytosphingosine metabolic pathway leading to odd-numbered fatty acids. Nat. Commun. 5, 5338 (2014).
5. Schürer, N.Y., Plewig, G., and Elias, P.M. Stratum corneum lipid function. Dermatologica 183(2), 77-94 (1991).

String Representations

InChiKey (Click to copy)
AERBNCYCJBRYDG-KSZLIROESA-N
InChi (Click to copy)
InChI=1S/C18H39NO3/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-17(21)18(22)16(19)15-20/h16-18,20-22H,2-15,19H2,1H3/t16-,17+,18-/m0/s1
SMILES (Click to copy)
OC[C@]([H])(N)[C@]([H])(O)[C@@](O)([H])CCCCCCCCCCCCCC

Other Databases

KEGG ID
HMDB ID
CHEBI ID
PubChem CID
SwissLipids ID
Cayman ID

Calculated Physicochemical Properties

Heavy Atoms 22
Rings 0
Aromatic Rings 0
Rotatable Bonds 16
Van der Waals Molecular Volume 357.33
Topological Polar Surface Area 86.71
Hydrogen Bond Donors 4
Hydrogen Bond Acceptors 3
logP 4.26
Molar Refractivity 94.80

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Updated at
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