Gene/Proteome Database (LMPD)

LMPD ID
LMP010420
Gene ID
834348
Species
Arabidopsis thaliana (Arabidopsis)
Gene Name
glycerophosphodiester phosphodiesterase
Gene Symbol
AT5G43300
Synonyms
MNL12.12; MNL12_12
Alternate Names
glycerophosphodiester phosphodiesterase
Chromosome
5
EC Number
3.1.4.46

Proteins

glycerophosphodiester phosphodiesterase
Refseq ID NP_199144
Protein GI 79528247
UniProt ID Q680A6
mRNA ID NM_123696
Length 370
RefSeq Status REVIEWED
MALETMTLSLSSSAMLSSGVVEDDKKQEAIVFPKFVLMGHRGFGMNMLQSPDEKMKFIKENSLLSFNVAADFPIDFIEFDVQVTRDGCPVIFHDIFMFTQEQGVIIEKRVTEMDLHEFLSYGPQRDGTNVKPMWRKTKDGRIFEWKVEKDDPLCTLEDAFLNVKHSLGFNIELKFDDNTVYGEGELRQTLDNILTVVNEHSKNRPIIFSSFHPDAARLIRNMQRCYPVFFLTNGGCEIYKDVRRNSLDEAIKLCKESGLQGLVSEVKAILRTPNAITRVKDSKLSLLSYGQLNNVVEVIYLQYLMGVEGVIVDMVKDISEAIANIEVTNEDDCEGEDERKCLIRFGEERKKVEITKDMITLLNKFVPKLL

Gene Information

Entrez Gene ID
834348
Gene Name
glycerophosphodiester phosphodiesterase
Gene Symbol
AT5G43300
Species
Arabidopsis thaliana

Gene Ontology (GO Annotations)

GO ID Source Type Description
GO:0008081 IEA:InterPro F phosphoric diester hydrolase activity
GO:0006629 IEA:InterPro P lipid metabolic process

BIOCYC Pathway Links

BIOCYC Pathway ID Description
PWY0-381 glycerol and glycerophosphodiester degradation

REACTOME Pathway Links

REACTOME Pathway ID Description
6253801 Glycerophospholipid biosynthesis
6254319 Hydrolysis of LPC
6254318 Hydrolysis of LPE

Domain Information

InterPro Annotations

Accession Description
IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain

UniProt Annotations

Entry Information

Gene Name
glycerophosphodiester phosphodiesterase
Protein Entry
GDPD3_ARATH
UniProt ID
Q680A6
Species
Arabidopsis

Comments

Comment Type Description
Catalytic Activity A glycerophosphodiester + H(2)O = an alcohol + sn-glycerol 3-phosphate. {ECO:0000250|UniProtKB:Q9SGA2}.
Induction By phosphate starvation. {ECO:0000269|PubMed:21323773}.
Sequence Caution Sequence=BAB10593.1; Type=Erroneous gene model prediction;
Similarity Belongs to the glycerophosphoryl diester phosphodiesterase family. {ECO:0000305}.
Similarity Contains 1 GP-PDE domain. {ECO:0000255}.
Tissue Specificity Expressed in flowers and siliques. {ECO:0000269|PubMed:21323773}.

Identical and Related Proteins

Unique RefSeq proteins for LMP010420 (as displayed in Record Overview)

Protein GI Database Accession Length Protein Name
79528247 RefSeq NP_199144 370 glycerophosphodiester phosphodiesterase

Identical Sequences to LMP010420 proteins

Reference Database Accession Length Protein Name
GI:79528247 DBBJ BAD43724.1 370 unnamed protein product [Arabidopsis thaliana]
GI:79528247 gnl TAIR 370 glycerophosphodiester phosphodiesterase [Arabidopsis thaliana]
GI:79528247 SwissProt Q680A6.1 370 RecName: Full=Glycerophosphodiester phosphodiesterase GDPD3; AltName: Full=Glycerophosphodiester phosphodiesterase 3; Short=ATGDPD3 [Arabidopsis thaliana]

Related Sequences to LMP010420 proteins

Reference Database Accession Length Protein Name
GI:79528247 GenBank AAQ62421.1 333 At5g43300 [Arabidopsis thaliana]
GI:79528247 GenBank EFH39926.1 372 glycerophosphodiester phosphodiesterase [Arabidopsis lyrata subsp. lyrata]
GI:79528247 GenBank EOA14983.1 376 hypothetical protein CARUB_v10028331mg [Capsella rubella]
GI:79528247 RefSeq XP_002863667.1 372 glycerophosphodiester phosphodiesterase [Arabidopsis lyrata subsp. lyrata]
GI:79528247 RefSeq XP_010481874.1 372 PREDICTED: LOW QUALITY PROTEIN: glycerophosphodiester phosphodiesterase GDPD3-like [Camelina sativa]
GI:79528247 RefSeq XP_010494310.1 379 PREDICTED: glycerophosphodiester phosphodiesterase GDPD3-like [Camelina sativa]