Gene/Proteome Database (LMPD)

LMPD ID
LMP010425
Gene ID
843761
Species
Arabidopsis thaliana (Arabidopsis)
Gene Name
glycerophosphoryl diester phosphodiesterase
Gene Symbol
AT1G74210
Synonyms
F1O17.12; F1O17_12
Alternate Names
glycerophosphoryl diester phosphodiesterase
Chromosome
1
EC Number
3.1.4.46

Proteins

glycerophosphoryl diester phosphodiesterase
Refseq ID NP_177561
Protein GI 15221164
UniProt ID Q9C907
mRNA ID NM_106081
Length 392
RefSeq Status REVIEWED
MILTRCLPLIWLSLLTVCAAGRTLHPLPVKGPKTVKLQLQTSRPYNIAHRGSNGEIPEETTAAYLKAIEEGTDFIETDILSSKDGVLICFHDCILDETTNVASHKEFADRKRTYDVQGFNITGFFTFDFTLKELKQLRIKQRYAFRDQQYNGMYPIITFEEFLTIARDAPRVVGIYPEIKNPVLMNQHVKWPGGKKFEDKVVETLKKYGYGGSYLSKKWLKKPLFIQSFAPTSLVYISNLTDSPKVLLIDDVTMPTQDTNQTYAEITSDAYFEYIKQYVVGIGPWKDTIVPVNNNYVLAPTDLVKRAHAHNLQVHPYTYRNEHEFLHYNFSQDPYKEYDYWINEIGVDGLFTDFTGSLHNFQEWTSPLPDTSKSPRQLLSQIASLVLPYAKA

Gene Information

Entrez Gene ID
843761
Gene Name
glycerophosphoryl diester phosphodiesterase
Gene Symbol
AT1G74210
Species
Arabidopsis thaliana

Gene Ontology (GO Annotations)

GO ID Source Type Description
GO:0005773 IDA:TAIR C vacuole
GO:0008889 IEA:InterPro F glycerophosphodiester phosphodiesterase activity
GO:0006071 IEA:InterPro P glycerol metabolic process
GO:0006629 IEA:InterPro P lipid metabolic process

KEGG Pathway Links

KEGG Pathway ID Description
ath00564 Glycerophospholipid metabolism
ko00564 Glycerophospholipid metabolism

BIOCYC Pathway Links

BIOCYC Pathway ID Description
PWY0-381 glycerol and glycerophosphodiester degradation
PWY-6952 glycerophosphodiester degradation

Domain Information

InterPro Annotations

Accession Description
IPR004129 Glycerophosphoryl diester phosphodiesterase
IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain

UniProt Annotations

Entry Information

Gene Name
glycerophosphoryl diester phosphodiesterase
Protein Entry
GDPD5_ARATH
UniProt ID
Q9C907
Species
Arabidopsis

Comments

Comment Type Description
Catalytic Activity A glycerophosphodiester + H(2)O = an alcohol + sn-glycerol 3-phosphate. {ECO:0000250|UniProtKB:Q9SGA2}.
Induction By phosphate starvation. {ECO:0000269|PubMed:21323773}.
Similarity Belongs to the glycerophosphoryl diester phosphodiesterase family. {ECO:0000305}.
Similarity Contains 1 GP-PDE domain. {ECO:0000255}.
Subcellular Location Secreted, cell wall {ECO:0000303|PubMed:14750903}. Vacuole {ECO:0000303|PubMed:14750903}.
Tissue Specificity Expressed in roots, rosette and cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:21323773}.

Identical and Related Proteins

Unique RefSeq proteins for LMP010425 (as displayed in Record Overview)

Protein GI Database Accession Length Protein Name
15221164 RefSeq NP_177561 392 glycerophosphoryl diester phosphodiesterase

Identical Sequences to LMP010425 proteins

Reference Database Accession Length Protein Name
GI:15221164 EMBL CBG07162.1 392 unnamed protein product [Arabidopsis thaliana]
GI:15221164 EMBL CBV20684.1 392 unnamed protein product [Arabidopsis thaliana]
GI:15221164 GenBank AAN13192.1 392 putative glycerophosphodiester phosphodiesterase [Arabidopsis thaliana]
GI:15221164 GenBank AEE35566.1 392 glycerophosphoryl diester phosphodiesterase [Arabidopsis thaliana]
GI:15221164 GenBank AGX98631.1 392 Sequence 77504 from patent US 8541208
GI:15221164 SwissProt Q9C907.1 392 RecName: Full=Glycerophosphodiester phosphodiesterase GDPD5; AltName: Full=Glycerophosphodiester phosphodiesterase 5; Short=ATGDPD5; Flags: Precursor [Arabidopsis thaliana]

Related Sequences to LMP010425 proteins

Reference Database Accession Length Protein Name
GI:15221164 GenBank EFH63790.1 391 predicted protein [Arabidopsis lyrata subsp. lyrata]
GI:15221164 GenBank ESQ27734.1 391 hypothetical protein EUTSA_v10018684mg [Eutrema salsugineum]
GI:15221164 RefSeq XP_002887531.1 391 predicted protein [Arabidopsis lyrata subsp. lyrata]
GI:15221164 RefSeq XP_006390448.1 391 hypothetical protein EUTSA_v10018684mg [Eutrema salsugineum]
GI:15221164 RefSeq XP_010416272.1 392 PREDICTED: glycerophosphodiester phosphodiesterase GDPD5-like [Camelina sativa]
GI:15221164 RefSeq XP_010428404.1 392 PREDICTED: glycerophosphodiester phosphodiesterase GDPD5 [Camelina sativa]