Structure Database (LMSD)
Common Name
Cholesteryl-6-O-(dimyristoyl-glycerophospho)-alpha-D-glucoside
Systematic Name
Cholesteryl-6-O-(1,2-ditetradecanoyl-sn-glycero-3-phospho)-α-D-glucopyranoside
Synonyms
3D model of Cholesteryl-6-O-(dimyristoyl-glycerophospho)-alpha-D-glucoside
Please note: Where there are chiral atoms but the stereochemistry is undefined, the 3D model takes an arbitrary conformation
Classification
Category
Main Class
Sub Class
References
Taxonomy Information
Curated from
NCBI taxonomy class
Reference
Helicobacter pylori
(#210)
Epsilonproteobacteria
(#3031852)
Unique cholesteryl glucosides in Helicobacter pylori: composition and structural analysis.,
J. Bact., 1995
J. Bact., 1995
Pubmed ID:
7665522
String Representations
InChiKey (Click to copy)
QOGBTAHKGXULJT-SUCTTWGUSA-N
InChi (Click to copy)
InChI=1S/C64H115O13P/c1-8-10-12-14-16-18-20-22-24-26-28-33-57(65)72-44-51(75-58(66)34-29-27-25-23-21-19-17-15-13-11-9-2)45-73-78(70,71)74-46-56-59(67)60(68)61(69)62(77-56)76-50-39-41-63(6)49(43-50)35-36-52-54-38-37-53(48(5)32-30-31-47(3)4)64(54,7)42-40-55(52)63/h35,47-48,50-56,59-62,67-69H,8-34,36-46H2,1-7H3,(H,70,71)/t48-,50+,51-,52+,53-,54+,55+,56-,59-,60+,61-,62+,63+,64-/m1/s1
SMILES (Click to copy)
[C@](COP(OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](O)[C@@H](O[C@H]2CC[C@]3(C)[C@@]4([H])CC[C@]5(C)[C@@H]([C@@H](CCCC(C)C)C)CC[C@@]5([H])[C@]4([H])CC=C3C2)O1)(=O)O)([H])(OC(CCCCCCCCCCCCC)=O)COC(CCCCCCCCCCCCC)=O
Other Databases
PubChem CID
Calculated Physicochemical Properties
Heavy Atoms
78
Rings
5
Aromatic Rings
0
Rotatable Bonds
42
Van der Waals Molecular Volume
1180.14
Topological Polar Surface Area
189.58
Hydrogen Bond Donors
4
Hydrogen Bond Acceptors
13
logP
18.24
Molar Refractivity
314.24
Admin
Created at
-
Updated at
4th Feb 2021
LIPID MAPS® abbreviations for glycerophospholipids (GP)
The LIPID MAPS® glycerophospholipid abbreviations (PC, PE, etc.) are used here to refer to species with one or two radyl side-chains where the structures of the side chains are indicated within parentheses in the 'Headgroup(sn1/sn2)' format (e.g. PC(16:0/18:1(9Z)). By default, R stereochemistry at the C-2 carbon of glycerol and attachment of the headgroup at the sn3 position is assumed. Also, acyl chains are assumed by default. The 'O-' prefix is used to indicate the presence of an alkyl ether substituent e.g. PC(O-16:0/18:1(9Z)), whereas the 'P-' prefix is used for the 1Z-alkenyl ether (Plasmalogen) substituent e.g. PC(P-16:0/18:1(9Z)).
For molecules with opposite (S) stereochemistry at C2 of the glycerol group and attachment of the headgroup at the sn1 position, the stereochemistry specification of [S] is appended to the abbreviation. The 'Headgroup(sn3/sn2)' abbreviation format is used.
For molecules with unknown stereochemistry at the C-2 carbon of the glycerol group, the stereochemistry specification of [U] is appended to the abbreviation and the structure is drawn with C-2 stereochemistry unspecified.
The LIPID MAPS® glycerophospholipid abbreviations (PC, PE, etc.) are used here to refer to species with one or two radyl side-chains where the structures of the side chains are indicated within parentheses in the 'Headgroup(sn1/sn2)' format (e.g. PC(16:0/18:1(9Z)). By default, R stereochemistry at the C-2 carbon of glycerol and attachment of the headgroup at the sn3 position is assumed. Also, acyl chains are assumed by default. The 'O-' prefix is used to indicate the presence of an alkyl ether substituent e.g. PC(O-16:0/18:1(9Z)), whereas the 'P-' prefix is used for the 1Z-alkenyl ether (Plasmalogen) substituent e.g. PC(P-16:0/18:1(9Z)).
For molecules with opposite (S) stereochemistry at C2 of the glycerol group and attachment of the headgroup at the sn1 position, the stereochemistry specification of [S] is appended to the abbreviation. The 'Headgroup(sn3/sn2)' abbreviation format is used.
For molecules with unknown stereochemistry at the C-2 carbon of the glycerol group, the stereochemistry specification of [U] is appended to the abbreviation and the structure is drawn with C-2 stereochemistry unspecified.