Research library - LIPID MAPS Publications: 2012

Key Lipidomics Publications

Special issues, with significant contributions from members of the LIPID MAPS Consortium

Lipid Biochemistry, Metabolism, and Signaling Editorial
Edited by H. Alex Brown and Lawrence J. Marnett. Chemical Reviews, 111, 5817-6512 (2011)
Lipidomics and Imaging Mass Spectrometry
Edited by Alfred H. Merrill and Robert C. Murphy. BBA - Molecular and Cellular Biology of Lipids, 1811, 635-1000 (2011)
Lipidomics and Bioactive Lipids: Mass-Spectrometry-Based Lipid Analysis
Edited by H. Alex Brown. Methods in Enzymology, 432, 1-387 (2007)
- Download all LIPID MAPS Chapters (PDF).

Peer-reviewed journal articles

A community-driven global reconstruction of human metabolism.
Nat Biotechnol. 2013 May;31(5):419-25. doi: 10.1038/nbt.2488. Epub 2013 Mar 3.
Macrophages, Inflammation, and Insulin Resistance
Jerrold M. Olefsky, Christopher K. Glass Annual Review of Physiology, 72 219-246 (2010)

more key publications

LIPID MAPS Publications

Year published: 2003 | 2004 | 2005 | 2006 | 2007 | 2008 | 2009 | 2010 | 2011 | 2012 | 2013 | 2014 | 2015 | 2016 | 2017

2012

Lipidomics: when apocrypha becomes canonical.

Brown HA

Curr Opin Chem Biol 16, 221-226 (2012)

doi: [10.1016/j.cbpa.2012.02.003]
Probing Conformational Changes in Human DNA Topoisomerase IIα by Pulsed Alkylation Mass Spectrometry.

Chen YT, Collins TR, Guan Z, Chen VB, Hsieh TS.

J Biol Chem 287, 25660-8 (2012)

PMID: 22679013
A complement-IL-4 regulatory circuit controls liver regeneration.

DeAngelis RA, Markiewski MM, Kourtzelis I, Rafail S, Syriga M, Sandor A, Maurya MR, Gupta S, Subramaniam S, Lambris JD

J Immunol 188, 641-8 (2012)

PMID: 22184721
Dietary fish oil substitution dramatically alters the e 1 icosanoid profile in ankle joints of mice during Lyme infection.

Dumlao DS, Cunningham AM, Wax LE, Norris PC, Hughes-Hanks JM, Halpin RE, Lett KM, Blaho VA, Mitchell WJ, Fritsche KL, Dennis EA, Brown CR

J Nutrition 142, 1582-9 (2012)

PMID: 22695969
Lipidomics, Technologies and Applications.

Edited by: Kim Ekroos

John Wiley & Sons , (2012)

doi: [10.1002/9783527655946]
(recommended – but not funded – by LIPID MAPS)
Evaluation of normalization methods in mammalian microRNA-Seq data.

Garmire LX, Subramaniam S.

RNA 18,1279-88 (2012)

PMID: 22532701
Inflammation and lipid signaling in the etiology of insulin resistance.

Glass CK, Olefsky JM

Cell Metab 15, 635-45 (2012)

PMID: 22560216
Spinal 12-lipoxygenase-derived Hepoxilin A3 contributes to inflammatory hyperalgesia via activation of TRPV1 and TRPA1 receptors.

Gregus AM, Dumlao DS, Doolen S, Takasusuki T, Buczynski MW, Fitzsimmons BL, Hua XY, Taylor BK, Dennis EA, Yaksh TL

Proc Natl Acad Sci U S A 109, 6721-6 (2012)

PMID: 22493235
The co-stimulatory immunogen LPS induces the B-cell clones that infiltrate transplanted human kidneys.

Grover RK, Cheng J, Peng Y, Jones T, Ruiz D, Ulevitch RJ, Glass J, Dennis EA, Salomon IH, Lerner RA

Proc Natl Acad Sci U S A 109, 6036-6041 (2012)

PMID: 22492977
Life with too much polyprenol: polyprenol reductase deficiency.

Grundahl JE, Guan Z, Rust S, Reunert J, Muller B, Du Chesne I, Zerres K, Rudnik-Schoneborn S, Ortiz-Bruchle N, Hausler MG, Siedlecka J, Swiezewska E, Raetz CR, Marquardt T

Mol Genet Metab 105, 642-51 (2012)

PMID: 22304929
Lipid diversity among botulinum neurotoxin-producing clostridia.

Guan Z, Johnston NC, Raetz CR, Johnson EA, Goldfine H.

Microbiology 158, (Pt 10):2577-84. (2012)

PMID: 22837302
Protein glycosylation as an adaptive response in Archaea: growth at different salt concentrations leads to alterations in Haloferax volcanii S-layer glycoprotein N-glycosylation.

Guan Z, Naparstek S, Calo D, Eichler J

Environ Microbiol 14, 743-53 (2012)

PMID: 22029420 doi: [10.1111/j.1462-2920.2011.02625.x]
Differential diagnosis in patients with suspected bile acid synthesis defects.

Haas D, Gan-Schreier H, Langhans CD, Rohrer T, Engelmann G, Heverin M, Russell DW, Clayton PT, Hoffmann GF, Okun JG

World J Gastroenterol 18, 1067-76 (2012)

PMID: 22416181 doi: [10.3748/wjg.v18.i10.1067]
Sphingosine 1-Phosphate (S1P) Lyase Deficiency Increases Sphingolipid Formation via Recycling at the Expense of de Novo Biosynthesis in Neurons.

Hagen-Euteneuer N, Lutjohann D, Park H, Merrill AH, Jr., van Echten-Deckert G

J Biol Chem 287, 9128-36 (2012)

PMID: 22291021
Essential role of ELOVL4 protein in very long chain fatty acid synthesis and retinal function.

Harkewicz R, Du H, Tong Z, Alkuraya H, Bedell M, Sun W, Wang X, Hsu YH, Esteve-Rudd J, Hughes G, Su Z, Zhang M, Lopes VS, Molday RS, Williams DS, Dennis EA, Zhang K.

J Biol Chem 287, 11469-80(2012)

PMID: 22199362
Diversity in prokaryotic glycosylation: an archaeal-derived N-linked glycan contains legionaminic acid.

Kandiba L, Aitio O, Helin J, Guan Z, Permi P, Bamford DH, Eichler J, Roine E

Mol Microbiol 84, 578-93 (2012)

PMID: 22435790 doi: [10.1111/j.1365-2958.2012.08045.x]
Role of Francisella lipid A phosphate modification in virulence and long-term protective immune responses.

Kanistanon D, Powell DA, Hajjar AM, Pelletier MR, Cohen IE, Way SS, Skerrett SJ, Wang X, Raetz CR, Ernst RK

Infect Immun 80, 943-51 (2012)

PMID: 22215738
Adiponutrin functions as a nutritionally regulated lysophosphatidic Acid acyltransferase.

Kumari M, Schoiswohl G, Chitraju C, Paar M, Cornaciu I, Rangrez AY, Wongsiriroj N, Nagy HM, Ivanova PT, Scott SA, Knittelfelder O, Rechberger GN, Birner-Gruenberger R, Eder S, Brown HA, Haemmerle G, Oberer M, Lass A, Kershaw EE, Zimmermann R, Zechner R

Cell Metab 15, 691-702 (2012)

PMID: 22560221
LPS remodeling is an evolved survival strategy for bacteria .

Li Y, Powell DA, Shafferc SA, Raskod DA, Pelletierb MR, Leszykc JD, Scottb AJ, Masoudie A, Goodlettf DR, Wanga X, Raetz CR, Ernst RK

Proc Natl Acad Sci U S A , Epub ahead of print (2012)

PMID: 22586119
CGI-58/ABHD5-Derived Signaling Lipids Regulate Systemic Inflammation and Insulin Action.

Lord CC, Betters JL, Ivanova PT, Milne SB, Myers DS, Madenspacher J, Thomas G, Chung S, Liu M, Davis MA, Lee RG, Crooke RM, Graham MJ, Parks JS, Brasaemle DL, Fessler MB, Brown HA, Brown JM

Diabetes 61, 355-63 (2012)

PMID: 22228714
Acid ceramidase (ASAH1) is a global regulator of steroidogenic capacity and adrenocortical gene expression.

Lucki NC, Bandyopadhyay S, Wang E, Merrill AH, Sewer MB

Mol Endocrinol 26, 228-43 (2012)

PMID: 22261821
A comprehensive method for extraction and quantitative analysis of sterols and secosteroids from human plasma.

McDonald JG, Smith DD, Stiles AR, Russell DW

J Lipid Res , (2012)

PMID: 22517925
LpxI structures reveal how a lipid A precursor is synthesized.

Metzger LE 4th, Lee JK, Finer-Moore JS, Raetz CR, Stroud RM.

Nat Struct Mol Biol. Nov;19(11):1132-8.
(2012)
PMID: 23042606 doi: [10.1038/nsmb.2393]
Dietary linoleate preserves cardiolipin and attenuates mitochondrial dysfunction in the failing rat heart.

Mulligan CM, Sparagna GC, Le CH, De Mooy AB, Routh MA, Holmes MG, Hickson-Bick DL, Zarini S, Murphy RC, Xu FY, Hatch GM, McCune SA, Moore RL, Chicco AJ

Cardiovasc Res , Epub ahead of print (2012)

PMID: 22411972
A predicted geranylgeranyl reductase reduces the omega-position isoprene of dolichol phosphate in the halophilic archaeon, Haloferax volcanii.

Naparstek S, Guan Z, Eichler J

Biochim Biophys Acta 1821, 923-933 (2012)

PMID: 22469971
Omega-3 fatty acids cause dramatic changes in TLR-4 and purinergic signaling.

Norris PC, Dennis EA

Proc Natl Acad Sci U S A , Epub ahead of print (2012)

PMID: 22586114
Targeted proteomics of the eicosanoid biosynthetic pathway completes an integrated genomics-proteomics-metabolomics picture of cellular metabolism.

Sabido E, Quehenberger O, Shen Q, Chang V, Shah I, Armando A, Andreyev A, Vitek O, Dennis EA, Aebersold R

Mol Cell Proteomics , Epub ahead of print (2012)

PMID: 22361236
Group IVA phospholipase A(2) is necessary for growth cone repulsion and collapse.

Sanford SD, Yun BG, Leslie CC, Murphy RC, Pfenninger KH

J Neurochem 120, 974-84 (2012)

PMID: 22220903 doi: [10.1111/j.1471-4159.2012.07651.x]
Ablation of ceramide synthase 2 strongly affects biophysical properties of membranes.

Silva LC, Ben David O, Pewzner-Jung Y, Laviad EL, Stiban J, Bandyopadhyay S, Merrill AH Jr, Prieto M, Futerman AH

Journal of Lipid Research 53, 430-6 (2012)

PMID: 22231783
Regulated Accumulation of Desmosterol Integrates Macrophage Lipid Metabolism and Inflammatory Responses

Spann NJ, Garmire L, McDonald JF, Meyers DS, Milne SB, Shibata N, Reichart D, Fox JN, Heudobler D, Raetz CR, Wang EW, Kelly SL, Sullards MC, Murphy RC, Merrill AH, Brown A, Dennis EA, Li AC, Fahy E, Subramaniam S, Quehenberger O, Russell DW, Glass C

Cell 151, 138-152 (2012)

doi: [10.1016/j.cell.2012.06.054]
Gene-expression measurement: variance-modeling considerations for robust data analysis.

Subramaniam S, Hsiao G

Nat Immunol 13, 199-203 (2012)

PMID: 22344273
LIPID MAPS-Nature Lipidomics Gateway: An online resource for students and educators interested in lipids .

Sud M, Fahy E, Cotter D, Dennis EA, Subramaniam S

J Chem Educ 89, 291-292 (2012)

doi: [10.1021/ed200088u]
Template-based combinatorial enumeration of virtual compound libraries for lipids.

Sud M, Fahy E, Subramaniam S.

Journal of Cheminformatics 4 23. (2012)

PMID:23006594 doi: [10.1186/1758-2946-4-23]
Differential expression of oxidation-specific epitopes and apolipoprotein(a) in progressing and ruptured human coronary and carotid atherosclerotic lesions.

van Dijk RA, Kolodgie F, Ravandi A, Leibundgut G, Hu PP, Prasad A, Mahmud E, Dennis E, Curtiss LK, Witztum JL, Wasserman BA, Otsuka F, Virmani R, Tsimikas S.

J Lipid Res 53 12. (2012)

PMID:22969153 doi: [10.1194/jlr.P030890]
A complex LuxR-LuxI type quorum sensing network in a roseobacterial marine sponge symbiont activates flagellar motility and inhibits biofilm formation.

Zan J, Cicirelli EM, Mohamed NM, Sibhatu H, Kroll S, Choi O, Uhlson CL, Wysoczinski CL, Murphy RC, Churchill ME, Hill RT, Fuqua C

Mol Microbiol 85, 21025-21033. (2012)

doi: [10.1111/j.1365-2958.2012.08149.x] PMID: 22539345

Research library - LIPID MAPS Publications: 2012

Key Lipidomics Publications

LIPID MAPS Publications

2012

Lipidomics: when apocrypha becomes canonical.

Probing Conformational Changes in Human DNA Topoisomerase IIα by Pulsed Alkylation Mass Spectrometry.

A complement-IL-4 regulatory circuit controls liver regeneration.

Dietary fish oil substitution dramatically alters the e 1 icosanoid profile in ankle joints of mice during Lyme infection.

Lipidomics, Technologies and Applications.

Evaluation of normalization methods in mammalian microRNA-Seq data.

Inflammation and lipid signaling in the etiology of insulin resistance.

Spinal 12-lipoxygenase-derived Hepoxilin A3 contributes to inflammatory hyperalgesia via activation of TRPV1 and TRPA1 receptors.

The co-stimulatory immunogen LPS induces the B-cell clones that infiltrate transplanted human kidneys.

Life with too much polyprenol: polyprenol reductase deficiency.

Lipid diversity among botulinum neurotoxin-producing clostridia.

Protein glycosylation as an adaptive response in Archaea: growth at different salt concentrations leads to alterations in Haloferax volcanii S-layer glycoprotein N-glycosylation.

Differential diagnosis in patients with suspected bile acid synthesis defects.

Sphingosine 1-Phosphate (S1P) Lyase Deficiency Increases Sphingolipid Formation via Recycling at the Expense of de Novo Biosynthesis in Neurons.

Essential role of ELOVL4 protein in very long chain fatty acid synthesis and retinal function.

Diversity in prokaryotic glycosylation: an archaeal-derived N-linked glycan contains legionaminic acid.

Role of Francisella lipid A phosphate modification in virulence and long-term protective immune responses.

Adiponutrin functions as a nutritionally regulated lysophosphatidic Acid acyltransferase.

LPS remodeling is an evolved survival strategy for bacteria .

CGI-58/ABHD5-Derived Signaling Lipids Regulate Systemic Inflammation and Insulin Action.

Acid ceramidase (ASAH1) is a global regulator of steroidogenic capacity and adrenocortical gene expression.

A comprehensive method for extraction and quantitative analysis of sterols and secosteroids from human plasma.

LpxI structures reveal how a lipid A precursor is synthesized.

Dietary linoleate preserves cardiolipin and attenuates mitochondrial dysfunction in the failing rat heart.

A predicted geranylgeranyl reductase reduces the omega-position isoprene of dolichol phosphate in the halophilic archaeon, Haloferax volcanii.

Omega-3 fatty acids cause dramatic changes in TLR-4 and purinergic signaling.

Targeted proteomics of the eicosanoid biosynthetic pathway completes an integrated genomics-proteomics-metabolomics picture of cellular metabolism.

Group IVA phospholipase A(2) is necessary for growth cone repulsion and collapse.

Ablation of ceramide synthase 2 strongly affects biophysical properties of membranes.

Regulated Accumulation of Desmosterol Integrates Macrophage Lipid Metabolism and Inflammatory Responses

Gene-expression measurement: variance-modeling considerations for robust data analysis.

LIPID MAPS-Nature Lipidomics Gateway: An online resource for students and educators interested in lipids .

Template-based combinatorial enumeration of virtual compound libraries for lipids.

Differential expression of oxidation-specific epitopes and apolipoprotein(a) in progressing and ruptured human coronary and carotid atherosclerotic lesions.

A complex LuxR-LuxI type quorum sensing network in a roseobacterial marine sponge symbiont activates flagellar motility and inhibits biofilm formation.