Structure Database (LMSD)

Common Name
N-(3-oxo-octanoyl)-homoserine lactone
Systematic Name
N-(3-oxo-octanoyl)-homoserine lactone
Synonyms
  • N-(3-Oxooctanoyl)homoserine lactone
LM ID
LMFA08030004
Formula
Exact Mass
Calculate m/z
241.131409
Status
Curated


Classification

Biological Context

Quorum sensing is a regulatory system used by bacteria for controlling gene expression in response to increasing cell density.1 This regulatory process manifests itself with a variety of phenotypes including biofilm formation and virulence factor production.2 Coordinated gene expression is achieved by the production, release, and detection of small diffusible signal molecules called autoinducers. The N-acylated homoserine lactones (AHLs) comprise one such class of autoinducers, each of which generally consists of a fatty acid coupled with homoserine lactone (HSL). Regulation of bacterial quorum sensing signaling systems to inhibit pathogenesis represents a new approach to antimicrobial therapy in the treatment of infectious diseases.3 AHLs vary in acyl group length (C4-C18), in the substitution of C3 (hydrogen, hydroxyl, or oxo group), and in the presence or absence of one or more carbon-carbon double bonds in the fatty acid chain. These differences confer signal specificity through the affinity of transcriptional regulators of the LuxR family.4 In the gram-negative bacterium A. tumefaciens, N-3-oxo-octanoyl-L-homoserine lactone promotes the expression of the transcriptional activator (and LuxR homolog) TraR.5

This information has been provided by Cayman Chemical

References

1. Gould, T.A., Herman, J., Krank, J., et al. Specificity of acyl-homoserine lactone syntheses examined by mass spectrometry. J. Bacteriol. 188(2), 773-783 (2006).

References

Taxonomy Information

Curated from
NCBI taxonomy class
Reference
Paraburkholderia tropica (#92647)
Betaproteobacteria (#28216)
Structural characterization of N-acyl-homoserine lactones from bacterial quorum sensing using LC-MS/MS analyses after Paternò-Büchi derivatization in solution.,
Anal Bioanal Chem, 2024
Pubmed ID: 38842688
Agrobacterium tumefaciens (#358)
Alphaproteobacteria (#28211)
Agrobacterium conjugation and gene regulation by N-acyl-L-homoserine lactones.,
Nature, 1993
Pubmed ID: 8464475

String Representations

InChiKey (Click to copy)
FXCMGCFNLNFLSH-JTQLQIEISA-N
InChi (Click to copy)
InChI=1S/C12H19NO4/c1-2-3-4-5-9(14)8-11(15)13-10-6-7-17-12(10)16/h10H,2-8H2,1H3,(H,13,15)/t10-/m0/s1
SMILES (Click to copy)
C1[C@@H](C(=O)OC1)NC(=O)CC(=O)CCCCC

Other Databases

KEGG ID
PubChem CID
Cayman ID
PDB ID

Calculated Physicochemical Properties

Heavy Atoms 17
Rings 1
Aromatic Rings
Rotatable Bonds 7
Van der Waals Molecular Volume 242.04
Topological Polar Surface Area 74.54
Hydrogen Bond Donors 1
Hydrogen Bond Acceptors 5
logP 1.53
Molar Refractivity 62.27

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Updated at
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