Research library - LIPID MAPS Publications: 2010

Key Lipidomics Publications

Special issues, with significant contributions from members of the LIPID MAPS Consortium

• Lipid Biochemistry, Metabolism, and Signaling Editorial

  Edited by H. Alex Brown and Lawrence J. Marnett. Chemical Reviews, 111, 5817-6512 (2011)



• Lipidomics and Imaging Mass Spectrometry

  Edited by Alfred H. Merrill and Robert C. Murphy. BBA - Molecular and Cellular Biology of Lipids, 1811, 635-1000 (2011)



• Lipidomics and Bioactive Lipids: Mass-Spectrometry-Based Lipid Analysis

  Edited by H. Alex Brown. Methods in Enzymology, 432, 1-387 (2007)
  - Download all LIPID MAPS Chapters (PDF).

Peer-reviewed journal articles

• A community-driven global reconstruction of human metabolism.

  Nat Biotechnol. 2013 May;31(5):419-25. doi: 10.1038/nbt.2488. Epub 2013 Mar 3.



• Macrophages, Inflammation, and Insulin Resistance

  Jerrold M. Olefsky, Christopher K. Glass Annual Review of Physiology, 72 219-246 (2010)

more key publications

LIPID MAPS Publications

Year published: 2003 | 2004 | 2005 | 2006 | 2007 | 2008 | 2009 | 2010 | 2011 | 2012 | 2013 | 2014 | 2015 | 2016 | 2017

2010

• Subcellular organelle lipidomics in TLR 4-activated macrophages.

  Andreyev AY, Fahy E, Guan Z, Kelly S, Li X, McDonald JG, Milne S, Myers DS, Park H, Ryan A, Thompson BM, Wang E, Zhao Y, Brown HA, Merrill AH, Raetz CR, Russell DW, Subramaniam S, Dennis EA

  J Lipid Res 51, 2785-2797 (2010)

  PMID: 20574076 doi: [10.1194/jlr.M008748]

• Application of proteomic marker ensembles to subcellular organelle identification.

  Andreyev AY, Shen Z, Guan Z, Ryan A, Fahy E, Subramaniam S, Raetz CR, Briggs S, Dennis EA

  Mol Cell Proteomics 9, 388-402 (2010)

  PMID: 19884172 doi: [10.1074/mcp.M900432-MCP200]

• Quantitative analysis of phospholipids containing arachidonate and docosahexenoate chains in microdissected regions of mouse brain.

  Axelsen PH, Murphy RC

  J Lipid Res 51, 660-71 (2010)

  PMID: 19767534 doi: [10.1194/jlr.D001750]

• Lithium modifies brain arachidonic and docosahexaenoic metabolism in rat lipopolysaccharide model of neuroinflammation.

  Basselin M, Kim HW, Chen M, Ma K, Rapoport SI, Murphy RC, Farias SE

  J Lipid Res 51, 1049-1056 (2010)

  PMID: 20040630

• Focus on molecules: ELOVL4.

  Bedell M, Harkewicz R, Wang X, Zhang K

  Exp Eye Res 90, 476-7 (2010)

  PMID: 19853604

• Plasticity of lipid-protein interactions in the function and topogenesis of the membrane protein lactose permease from Escherichia coli.

  Bogdanov M, Heacock P, Guan Z, Dowhan W

  Proc Natl Acad Sci U S A 107, 15057-62 (2010)

  PMID: 20696931

• Inflammatory hyperalgesia induces essential bioactive lipid production in the spinal cord.

  Buczynski MW, Svensson C, Dumlao D, Fitzsimmons B, Shim JH, Scherbart T, Jacobsen FE, Hua XY, Yaksh TL, Dennis EA

  J Neurochem 114, 981-993 (2010)

  PMID: 20492349 doi: [10.1111/j.1471-4159.2010.06815.x]

• Modeling species-specific diacylglycerol dynamics in the RAW 264.7 macrophage.

  Callender HL, Horn MA, DeCamp DL, Sternweis PC, Brown HA

  J Theor Biol 262, 679-690 (2010)

  PMID: 19883664 doi: [10.1016/j.jtbi.2009.10.030]

• The SRD5A3 gene is required for the conversion of polyprenol to dolichol, essential for N-linked protein glycosylation.

  Cantagrel V, Lefeber DJ, Ng BG, Guan Z, Silhavy JL, Bielas SL, Lehle L, Hombauer H, Adamowicz M, Swiezewska E, De Brouwer AP, Blümel P, Cegielska J, Houliston SR, Swistun D, Ali BR, Babovic-Vuksanovic D, van Bokhoven H, Wevers RA, Raetz CRH, Freeze HH, Morava E, Al-Gazali L, Gleeson JG

  Cell 142, 203-217 (2010)

  PMID: 20637498 doi: [10.1016/j.cell.2010.06.001]

• Imaging MALDI mass spectrometry of sphingolipids using an oscillating capillary nebulizer matrix application system.

  Chen Y, Liu Y, Allegood J, Wang E, Cachon-Gonzalez B, Cox TM, Merrill AH, Jr., Sullards MC

  Methods Mol Biol 656, 131-46 (2010)

  PMID: 20680588

• An introduction to sphingolipid metabolism and analysis by new technologies.

  Chen Y, Liu Y, Sullards MC, Merrill AH, Jr.

  Neuromolecular Med 12, 306-319 (2010)

  PMID: 20680704

• Statins enhance formation of phagocyte extracellular traps.

  Chow OA, von Kockritz-Blickwede M, Bright AT, Hensler ME, Zinkernagel AS, Cogen AL, Gallo RL, Monestier M, Wang Y, Glass CK, Nizet V

  Cell Host Microbe 8, 445-454 (2010)

  PMID: 21075355 doi: [10.1016/j.chom.2010.10.005]

• Sphingolipid distribution changes with age in the human lens.

  Deeley JM, Hankin JA, Friedrich MG, Murphy RC, Truscott RJ, Mitchell TW, Blanksby SJ

  J Lipid Res 51, 2753-60 (2010)

  PMID: 20547889

• A mouse macrophage lipidome.

  Dennis EA, Harkewicz R, Quehenberger O, Brown HA, Milne SB, Myers DS, Glass CK, Hardiman G, Reichart D, Merrill AH, Sullards MC, Wang E, Murphy RC, Raetz CR, Garrett TA, Guan Z, Ryan AC, Russell DW, McDonald JG, Thompson BM, Shaw WA, Sud M, Zhao Y, Fahy E, Subramaniam S

  J Biol Chem 285, 39976-39985 (2010)

  PMID: 20923771

• Oxidized cholesteryl esters and phospholipids in zebrafish larvae fed a high-cholesterol diet: macrophage binding and activation.

  Fang L, Harkewicz R, Hartvigsen K, Wiesner P, Choi SH, Almazan F, Pattison J, Deer E, Sayaphupha T, Dennis EA, Witztum JL, Tsimikas S, Miller YI

  J Biol Chem 285, 32343-32351 (2010)

  PMID: 20710028

• Regulatory network of microRNAs in RAW 264.7 macrophage cells.

  Garmire LX, Shen Z, Briggs S, Yeo G, Subramaniam S, Glass C

  Conf Proc IEEE Eng Med Biol Soc 1, 6198-6201 (2010)

  PMID: 21097158

• Molecular characterization of the cis-prenyltransferase of Giardia lamblia.

  Grabinska KA, Cui J, Chatterjee A, Guan Z, Raetz CR, Robbins PW, Samuelson J

  Glycobiology 20, 824-832 (2010)

  PMID: 20308470 doi: [10.1093/glycob/cwq036]

• Distinct glycan-charged phosphodolichol carriers are required for the assembly of the pentasaccharide N-linked to the Haloferax volcanii S-layer glycoprotein.

  Guan Z, Naparstek S, Kaminski L, Konrad Z, Eichler J

  Mol Microbiol 78, 1294-1303 (2010)

  PMID: 21091511

• Identification of crosstalk between phosphoprotein signaling pathways in RAW 264.7 macrophage cells.

  Gupta S, Maurya MR, Subramaniam S

  PLoS Comput Biol 6, e1000654 (2010)

  PMID: 20126526 doi: [10.1371/journal.pcbi.1000654]

• Relationship between MALDI IMS intensity and measured quantity of selected phospholipids in rat brain sections.

  Hankin JA, Murphy RC

  Anal Chem 82, 8476-8484 (2010)

  PMID: 20853893

• Pharmacological correction of a defect in PPAR-gamma signaling ameliorates disease severity in Cftr-deficient mice.

  Harmon GS, Dumlao DS, Ng DT, Barrett KE, Dennis EA, Dong H, Glass CK

  Nat Med 16, 313-318 (2010)

  PMID: 20154695 doi: [10.1038/nm.2101]

• Escherichia coli mutants that synthesize dephosphorylated lipid a molecules.

  Ingram BO, Masoudi A, Raetz CR

  Biochemistry 49, 8325-37 (2010)

  PMID: 20795687 doi: [10.1021/bi101253s]

• Altered lipid A structures and polymyxin hypersensitivity of Rhizobium etli mutants lacking the LpxE and LpxF phosphatases.

  Ingram BO, Sohlenkamp C, Geiger O, Raetz CR

  Biochim Biophys Acta 1801, 593-604 (2010)

  PMID: 20153447 doi: [10.1016/j.bbalip.2010.02.001]

• Identification of atypical ether-linked glycerophospholipid species in macrophages by mass spectrometry.

  Ivanova PT, Milne SB, Brown HA

  J Lipid Res 51, 1581-1590 (2010)

  PMID: 19965583

• A phosphoethanolamine-modified glycosyl diradylglycerol in the polar lipids of clostridium tetani.

  Johnston NC, Aygun-Sunar S, Guan Z, Ribeiro AA, Daldal F, Raetz CR, Goldfine H

  J Lipid Res 51, 1953-1961 (2010)

  PMID: 20173213 doi: [10.1194/jlr.M004788]

• Conserved role for autophagy in Rho1-mediated cortical remodeling and blood cell recruitment.

  Kadandale P, Glass CK, Stender JD, Kiger AA

  Proc Natl Acad Sci U S A 107, 10502-10507 (2010)

  PMID: 20498061

• AglJ adds the first sugar of the N-linked pentasaccharide decorating the Haloferax volcanii S-layer glycoprotein.

  Kaminski L, Abu-Qarn M, Guan Z, Naparstek S, Ventura VV, Raetz CR, Hitchen PG, Dell A, Eichler J

  J Bacteriol 192, 5572-9 (2010)

  PMID: 20802039

• Extensive sphingolipid depletion does not affect lipid raft integrity or lipid raft localization and efflux function of the ABC transporter MRP1.

  Klappe K, Dijkhuis AJ, Hummel I, van Dam A, Ivanova PT, Milne SB, Myers DS, Brown HA, Permentier H, Kok JW

  Biochem J 430, 519-29 (2010)

  PMID: 20604746

• Elevation of sulfatides in ovarian cancer: An integrated transcriptomic and lipidomic analysis including tissue-imaging mass spectrometry.

  Liu Y, Chen Y, Momin A, Shaner R, Wang E, Bowen NJ, Matyunina LV, Walker LD, McDonald JF, Sullards MC, Merrill AH, Jr.

  Mol Cancer 9, 186 (2010)

  PMID: 20624317

• Molecular depth profiling with cluster secondary ion mass spectrometry and wedges.

  Mao D, Wucher A, Winograd N

  Anal Chem 82, 57-60 (2010)

  PMID: 19968247 doi: [10.1021/ac902313q]

• An alternative route for UDP-diacylglucosamine hydrolysis in bacterial lipid A biosynthesis.

  Metzger LEt, Raetz CR

  Biochemistry 49, 6715-26 (2010)

  PMID: 20608695 doi: [10.1021/bi1008744]

• Lipoprotein modification and macrophage uptake: role of pathologic cholesterol transport in atherogenesis.

  Miller YI, Choi SH, Fang L, Tsimikas S

  Subcell Biochem 51, 229-51 (2010)

  PMID: 20213546 doi: [10.1007/978-90-481-8622-8_8]

• Capture and release of alkyne-derivatized glycerophospholipids using cobalt chemistry.

  Milne SB, Tallman KA, Serwa R, Rouzer CA, Armstrong MD, Marnett LJ, Lukehart CM, Porter NA, Brown HA

  Nat Chem Biol 6, 205-207 (2010)

  PMID: 20098428 doi: [10.1038/nchembio.311]

• Isoprostane nomenclature: More suggestions.

  Murphy RC, Fahy E

  Prostaglandins Leukot Essent Fatty Acids 82, 69-70 (2010)

  PMID: 20092991 doi: [10.1016/j.plefa.2010.01.001]

• Macrophages, Inflammation, and Insulin Resistance.

  Olefsky, J, Glass, C

  Annual Review of Physiology 72, 219-246 (2010)

  PMID: 20148674 doi: [10.1146/annurev-physiol-021909-135846]

• Transcript profiling and lipidomic analysis of ceramide subspecies in mouse embryonic stem cells and embryoid bodies.

  Park H, Haynes CA, Nairn AV, Kulik M, Dalton S, Moremen K, Merrill AH, Jr.

  J Lipid Res 51, 480-9 (2010)

  PMID: 19786568 doi: [10.1194/jlr.M000984]

• Heat generates oxidized linoleic acid metabolites that activate TRPV1 and produce pain in rodents.

  Patwardhan AM, Akopian AN, Ruparel NB, Diogenes A, Weintraub ST, Uhlson C, Murphy RC, Hargreaves KM

  J Clin Invest 120, 1617-26 (2010)

  PMID: 20424317

• Lipidomics reveals a remarkable diversity of lipids in human plasma.

  Quehenberger O, Armando A, Brown HA, Milne JS, Myers DS, Merrill AH, Bandyopadyhay S, Jones ND, Kelly S, Shaner RL, Sullards MC, Wang E, Murphy RC, Barkley RM, Leiker TJ, Raetz CR, Guan Z, Laird GM, Six DA, Russell DW, McDonald JG, Subramaniam S, Fahy E, Dennis EA

  J Lipid Res 51, 3299-3305 (2010)

  PMID: 20671299

• Expression of functional bacterial undecaprenyl pyrophosphate synthase in the yeast rer2{Delta} mutant and CHO cells.

  Rush JS, Matveev S, Guan Z, Raetz CR, Waechter CJ

  Glycobiology 20, 1585-93 (2010)

  PMID: 20685834

• Spinal glial TLR4-mediated nociception and production of prostaglandin E2 and TNF.

  Saito O, Svensson CI, Buczynski MW, Wegner K, Hua XY, Codeluppi S, Schaloske RH, Deems RA, Dennis EA, Yaksh TL

  Brit J Pharm 160, 1754-1764 (2010)

  PMID: 20649577

• Atherogenic lipids and lipoproteins trigger CD36-TLR2-dependent apoptosis in macrophages undergoing endoplasmic reticulum stress.

  Seimon TA, Nadolski MJ, Liao X, Magallon J, Nguyen M, Ferric NT, Koschinsky ML, Harkewicz R, Witztum JL, Tsimikas S, Golenbock D, Moore KJ, Tabas I

  Cell Metab 12, 467-482 (2010)

  PMID: 21035758

• Macrophages, oxysterols and atherosclerosis.

  Shibata N, Glass CK

  Circ J 74, 2045-51 (2010)

  PMID: 20838002

• Molecular species of phosphatidylinositol-cycle intermediates in the endoplasmic reticulum and plasma membrane.

  Shulga YV, Myers DS, Ivanova PT, Milne SB, Brown HA, Topham MK, Epand RM

  Biochemistry 49, 312-7 (2010)

  PMID: 20000336 doi: [10.1021/bi901551e]

• Kdo2-Lipid A, a TLR4 specific agonist, induces de novo sphingolipid biosynthesis in RAW264.7 macrophages, which is essential for induction of autophagy.

  Sims K, Haynes CA, Kelly S, Allegood JC, Wang E, Momin A, Leipelt M, Reichart D, Glass CK, Sullards MC, Merrill AH, Jr.

  J Biol Chem 285, 38568-38579 (2010)

  PMID: 20876532

• Oxidized low-density lipoprotein and atherosclerosis.

  Steinberg D, Witztum JL

  Arterioscler Thromb Vasc Biol 30, 2311-2316 (2010)

  PMID: 21084697

• Diabetes and insulin in regulation of brain cholesterol metabolism.

  Suzuki R, Lee K, Jing E, Biddinger SB, McDonald JG, Montine TJ, Craft S, Kahn CR

  Cell Metab 12, 567-79 (2010)

  PMID: 21109190

• Phospholipid-esterified eicosanoids are generated in agonist-activated human platelets and enhance tissue factor-dependent thrombin generation.

  Thomas CP, Morgan LT, Maskrey BH, Murphy RC, Kuhn H, Hazen SL, Goodall AH, Hamali HA, Collins PW, O'Donnell VB

  J Biol Chem 285, 6891-903 (2010)

  PMID: 20061396 doi: [10.1074/jbc.M109.078428]

• Nasal chemosensory cells use bitter taste signaling to detect irritants and bacterial signals.

  Tizzano M, Gulbrahansen BD, Vandenbeuch A, Clapp TR, Herman JP, Sibhatu HM, Churchill ME, Silver WL, Kinnamon SC, Finger TE

  Proc Natl Acad Sci U S A 107, 3210-3215 (2010)

  PMID: 20133764 doi: [10.1073/pnas.0911934107]

• The galactocerebrosidase enzyme contributes to the maintenance of a functional hematopoietic stem cell niche.

  Visigalli I, Ungari S, Martino S, Park H, Cesani M, Gentner B, Sergi Sergi L, Orlacchio A, Naldini L, Biffi A

  Blood 116, 1857-66 (2010)

  PMID: 20511539

• Application of electrospray ionization mass spectrometry to characterize glycerophospholipids in Francisella tularensis subsp novicida.

  Wang XY, Guan ZQ, Li YY, Raetz CRH

  Int J Mass Spectrom 293, 45-50 (2010)

• Low doses of LPS and minimally oxidized LDL cooperatively activate macrophages via NF-kappa B and AP-1: Possible mechanism for acceleration of atherosclerosis by subclinical endotoxemia.

  Wiesner P, Choi SH, Almazan F, Benner C, Huang W, Diehl CJ, Gonen A, Butler S, Witztum JL, Glass CK, Miller YI

  Circ Res 107, 56-65 (2010)

  PMID: 20489162

• Altered sphingolipid metabolism induced by tumor hypoxia - New vistas in glycolipid tumor markers.

  Yin J, Miyazaki K, Shaner RL, Merrill AH, Jr., Kannagi R

  FEBS Lett 584, 1872-1878 (2010)

  PMID: 19913543

• Sinorhizobium meliloti phospholipase C required for lipid remodeling during phosphorus limitation.

  Zavaleta-Pastor M, Sohlenkamp C, Gao JL, Guan Z, Zaheer R, Finan TM, Raetz CR, Lopez-Lara IM, Geiger O

  Proc Natl Acad Sci U S A 107, 302-7 (2010)

  PMID: 20018679 doi: [10.1073/pnas.0912930107]

• Characterization of oxidized phosphatidylethanolamine derived from RAW 264.7 cells using 4-(dimethylamino)benzoic acid derivatives.

  Zemski Berry K, Turner WW, VanNieuwenhze MS, Murphy RC

  Eur J Mass Spectrom 16, 463-70 (2010)

  PMID: 20530831

• A two-component Kdo hydrolase in the inner membrane of Francisella novicida.

  Zhao J, Raetz CR

  Mol Microbiol 78, 820-36 (2010)

  PMID: 20662782