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<h1 class="heading">Research library - Key Lipidomics Publications</h1>
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<strong>Publications stemming from projects supported by LIPID MAPS funding</strong>
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<strong>Peer-reviewed journal articles</strong>
<ul class='list-item'>
  <li>year published:
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  <p>Year published:
     <a href="2003.html">2003</a>
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</p>
<!--
   |  <a href="2012.html">2012</a>
  </li>
</ul>
<p>
  Year published:
     <a href="2003.html">2003</a>
   | <a href="2004.html">2004</a>
   | <a href="2005.html">2005</a>
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   |  <a href="2012.html">2012</a>
</p>
<li>Key publications (2003 - 2012)
<em>Key publications </em>
<ul class='list-item'>
  <li><a href="">Macrophages, Inflammation, and Insulin Resistance</a>, <em>Annual Review of Physiology</em>, Volume 72, Jerrold M. Olefsky, Christopher K. Glass - Annual Reviews' 10th most downloaded article of 2011.</li>
  <li><em>Chemical Reviews</em> Oct, 2011, Special issue: <a href="http://pubs.acs.org/toc/chreay/111/10">Lipid Biochemistry Metabolism and Signaling</a> Edited by H. Alex Brown and Lawrence J. Marnett </li>
  <li><em>BBA - Molecular and Cellular Biology of Lipids</em> Oct, 2011, Special issue: <a href="http://www.journals.elsevier.com/bba-molecular-and-cell-biology-of-lipids/">Lipidomics and Imaging Mass Spectrometry</a> Edited by Alfred H. Merrill and Robert C. Murphy</li>
</ul>
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<p style="font-size:.8em;">
<a href="">Macrophages, Inflammation, and Insulin Resistance</a>, <em>Annual Review of Physiology</em>, Volume 72, Jerrold M. Olefsky, Christopher K. Glass - Annual Reviews' 10th most downloaded article of 2011.
<br>
<br><em>Chemical Reviews</em> Oct, 2011, Special issue: <a href="http://pubs.acs.org/toc/chreay/111/10">Lipid Biochemistry Metabolism and Signaling</a> Edited by H. Alex Brown and Lawrence J. Marnett
<br>
<br><em>BBA - Molecular and Cellular Biology of Lipids</em> Oct, 2011, Special issue: <a href="http://www.journals.elsevier.com/bba-molecular-and-cell-biology-of-lipids/">Lipidomics and Imaging Mass Spectrometry</a> Edited by Alfred H. Merrill and Robert C. Murphy
</p>


  <p class="more">
    <a href="/resources/lipidmapspublications/key.html">more key publications</a>
  </p>
-->



<!--
<strong>Special issues, with significant contributions from members of the LIPID MAPS Consortium</strong>
  <p>
    <em>Chemical Reviews</em> Oct, 2011, Special issue: <a href="http://pubs.acs.org/toc/chreay/111/10">Lipid Biochemistry Metabolism and Signaling</a> Edited by H. Alex Brown and Lawrence J. Marnett 
    <br><em>Methods in Enzymology, Academic Press</em> <strong>432</strong> (2007) - Download all <a href="/downloads/2007_methods_chapters.pdf">LIPID MAPS Chapters</a> (PDF).
  </p>

<strong>Special issues, with significant contributions from members of the LIPID MAPS Consortium</strong>
<ul class='list-item'>
  <li><em>BBA - Molecular and Cellular Biology of Lipids</em> Oct, 2011, Special issue: <a href="http://www.journals.elsevier.com/bba-molecular-and-cell-biology-of-lipids/">Lipidomics and Imaging Mass Spectrometry</a> Edited by Alfred H. Merrill and Robert C. Murphy</li>
  <li><em>Methods in Enzymology, Academic Press</em> <strong>432</strong> (2007) - Download all <a href="/downloads/2007_methods_chapters.pdf">LIPID MAPS Chapters</a> (PDF).</li>
</ul>
-->


<h2 class="sub-heading">Key LIPID MAPS publications</h2>
<ul class="research-lib-months update-details">
<!-- <font color="red" size="5">THIS PAGE IS IN PROGRESS</font><br> -->
<strong>Special issues, with significant contributions from members of the LIPID MAPS Consortium</strong>
<br>
<br>
<!--
  <p>
    <br><em>Methods in Enzymology, Academic Press</em> <strong>432</strong> (2007) - Download all <a href="/downloads/2007_methods_chapters.pdf">LIPID MAPS Chapters</a> (PDF).
  </p>
<ul class='list-item'>
  <li><em>Chemical Reviews</em> Oct, 2011, Special issue: <a href="http://pubs.acs.org/toc/chreay/111/10">Lipid Biochemistry Metabolism and Signaling</a> Edited by H. Alex Brown and Lawrence J. Marnett </li>
  <li><em>BBA - Molecular and Cellular Biology of Lipids</em> Oct, 2011, Special issue: <a href="http://www.journals.elsevier.com/bba-molecular-and-cell-biology-of-lipids/">Lipidomics and Imaging Mass Spectrometry</a> Edited by Alfred H. Merrill and Robert C. Murphy</li>
  <li><em>Methods in Enzymology, Academic Press</em> <strong>432</strong> (2007) - Download all <a href="/downloads/2007_methods_chapters.pdf">LIPID MAPS Chapters</a> (PDF).</li>
</ul>
-->



<!--
<li><h3 class="title">Systems Biology of Macrophages.</h3>
<p>Maurya MR, Benner C, Pradervand S, Glass C, and Subramaniam S</p>
<p>In <span class="journalname">Current Topics in Innate Immunity</span>, Ed. J.D. Lambris. 62-79. Springer, New York (2007)</p></li>
<br>
-->

<!--




<li>
<h3 class="title">Lipid Biochemistry Metabolism and Signaling</h3>
<p>Edited by H. Alex Brown and Lawrence J. Marnett</p>
<p><span class="journalname">Chemical Reviews</span>, Oct, 2011 (2011). Special Issue</p>
</li>
<em>Chemical Reviews</em> Oct, 2011, Special issue: <a href="http://pubs.acs.org/toc/chreay/111/10">Lipid Biochemistry Metabolism and Signaling</a>

<li>
<em>BBA - Molecular and Cellular Biology of Lipids</em> Oct, 2011, Special issue: <a href="http://www.journals.elsevier.com/bba-molecular-and-cell-biology-of-lipids/">Lipidomics and Imaging Mass Spectrometry</a> Edited by Alfred H. Merrill and Robert C. Murphy
</li>

<li><h3 class="title">Lipidomics and Imaging Mass Spectrometry</h3>
<p>Edited by Alfred H. Merrill and Robert C. Murphy</p>
<p><span class="journalname">Journal</span> <span class="journalvol"></span>, pg-span (yr)</p>
<p class="doi">
[ PMID: <a href=""></a> doi: <a href=""></a>]
</p>
</li>



<li>
<em>Methods in Enzymology, Academic Press</em> <strong>432</strong> (2007) - Download all <a href="/downloads/2007_methods_chapters.pdf">LIPID MAPS Chapters</a> (PDF).
</li>

<h3 class='title'>Chemical Reviews</em> Oct, 2011, Special issue: <a href="http://pubs.acs.org/toc/chreay/111/10">Lipid Biochemistry Metabolism and Signaling</a> Edited by H. Alex Brown and Lawrence J. Marnett </li>
<h3 class='title'>BBA - Molecular and Cellular Biology of Lipids</em> Oct, 2011, Special issue: <a href="http://www.journals.elsevier.com/bba-molecular-and-cell-biology-of-lipids/">Lipidomics and Imaging Mass Spectrometry</a> Edited by Alfred H. Merrill and Robert C. Murphy</li>
<h3 class='title'>Methods in Enzymology, Academic Press</em> <strong>432</strong> (2007) - Download all <a href="/downloads/2007_methods_chapters.pdf">LIPID MAPS Chapters</a> (PDF).</li>

Molecular and cellular biology of lipids
<li><h3 class="title"><a href="http://www.journals.elsevier.com/bba-molecular-and-cell-biology-of-lipids/">Lipidomics and Imaging Mass Spectrometry</a>
-->


<!-- <li><h3 class="title">Lipid Biochemistry Metabolism and Signaling</h3> -->
<li><h3 class="title"><a href="http://pubs.acs.org/toc/chreay/111/10">Lipid Biochemistry, Metabolism, and Signaling Editorial</a></h3>
<p>Edited by H. Alex Brown and Lawrence J. Marnett.
<span class="journalname">Chemical Reviews</span>, <strong>111</strong>, 5817-6512 (2011)
</p>
</li>
<br>

<li><h3 class="title"><a href="http://www.sciencedirect.com/science/journal/13881981/1811/11">Lipidomics and Imaging Mass Spectrometry</a></h3>
<p>Edited by Alfred H. Merrill and Robert C. Murphy.
<span class="journalname">BBA - Molecular and Cellular Biology of Lipids</span>, <strong>1811</strong>, 635-1000 (2011)
</p>
</li>
<br>

<li><h3 class="title"><a href="http://www.sciencedirect.com/science/bookseries/00766879/432">Lipidomics and Bioactive Lipids: Mass-Spectrometry-Based Lipid Analysis</a></h3>
<p>Edited by H. Alex Brown.
<span class="journalname">Methods in Enzymology</span>, <strong>432</strong>, 1-387 (2007)
<br>- Download all <a href="/resources/downloads/2007_methods_chapters.pdf">LIPID MAPS Chapters</a> (PDF).
</p>
</li>

<br>
<strong>Peer-reviewed journal articles</strong>
<br>
<br>
<li>
<h3 class='title'>Gene-expression measurement: variance-modeling considerations for robust data analysis</h3>
<p>Shankar Subramaniam &amp; Gene Hsiao</p>
<p><span class="journalname">Nature Immunology</span>, <span class="journalvol">13</span>,199-203 (2012)
<p class="doi">[ PMID: <a href="http://www.ncbi.nlm.nih.gov/pubmed/22344273">22344273</a> doi: <a href="http://dx.doi.org/10.1038/ni.2244">10.1038/ni.2244</a> ]</p>
</li>

<li>
<h3 class='title'>Macrophages, Inflammation, and Insulin Resistance</h3>
<p>Olefsky, J, Glass, C</p>
<p><span class="journalname">Annual Review of Physiology</span>, Volume 72 (2011)</p>
<p class="doi">[ PMID: <a href="http://www.ncbi.nlm.nih.gov/pubmed/20148674">20148674</a> doi: <a href="http://dx.doi.org/10.1146/annurev-physiol-021909-135846">10.1146/annurev-physiol-021909-135846</a> ]</p>
</li>

<li>
<h3 class='title'>Lipidomics reveals a remarkable diversity of lipids in human plasma.</h3>
<p>Quehenberger O, Armando A, Brown HA, Milne JS, Myers DS, Merrill AH, Bandyopadyhay S, Jones ND, Kelly S, Shaner RL, Sullards MC, Wang E, Murphy RC, Barkley RM, Leiker TJ, Raetz CR, Guan Z, Laird GM, Six DA, Russell DW, McDonald JG, Subramaniam S, Fahy E, Dennis EA</p>
<p><span class="journalname">J Lipid Res</span> <span class="journalvol">51</span>, 3299-3305 (2010)</p>
<p class="doi">[ PMID: <a href="http://www.ncbi.nlm.nih.gov/pubmed/20671299">20671299</a> ]</p>
</li>

<li>
<h3 class="title">Update of the LIPID MAPS comprehensive classification system for lipids.</h3>
<p>Fahy E, Subramaniam S, Murphy R, Nishijima M, Raetz C, Shimizu T, Spener F, van Meer G, Wakelam M and Dennis E.</p>
<p><span class="journalname">Journal of Lipid Research</span> <span class="journalvol">50</span>, S9-S14 (2009)</p>
</p>
<p class="doi"> [ PMID:<a href='http://www.ncbi.nlm.nih.gov/pubmed/19098281'>19098281</a> doi: <a href="http://dx.doi.org/10.1194/jlr.R800095-JLR200">10.1194/jlr.R800095-JLR200</a> ]</p>
</li>

<li><h3 class="title">LIPID MAPS online tools for lipid research.</h3>
<p>Fahy E, Sud M, Cotter D and Subramaniam S.</p> <!-- Eoin Fahy et al. -->
<p><span class="journalname">Nucleic Acids Research</span> <span class="journalvol">35</span>, W606-12 (2007)</p>
<p class="doi"> <!-- <br><a href='http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17584797'>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17584797</a> -->
[ PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17584797'>17584797</a> doi: <a href="http://dx.doi.org/10.1093/nar/gkm324">10.1093/nar/gkm324</a> ]</p>
</li>

<li><h3 class="title">Parallel SUMOylation-dependent pathways mediate gene- and signal-specific transrepression by LXRs and PPARgamma.</h3>
<p>Ghisletti S, Huang W, Ogawa S, Pascual G, Lin M, Willson T, Rosenfeld M and Glass C.</p> <!-- Serena Ghisletti et al. -->
<p><span class="journalname">Molecular Cell</span> <span class="journalvol">25</span>, 57-70 (2007)</p> <!-- Molecular Cell 25, 57-70 (Jan 2007) -->
<p class="doi"> <!-- <br><a href='http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17218271'>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17218271</a> --> 
[ PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17218271'>17218271</a> doi: <a href="http://dx.doi.org/10.1016/j.molcel.2006.11.022">10.1016/j.molcel.2006.11.022</a> ]</p></li>

<li><h3 class="title">Macrophage PPAR gamma is required for normal skeletal muscle and hepatic insulin sensitivity and full antidiabetic effects of thiazolidinediones.</h3>
<p>Hevener A, Olefsky J, Reichart D, Nguyen M, Bandyopadyhay G, Leung H, Watt M, Benner C, Febbraio M, Nguyen A, Folian B, Subramaniam S, Gonzalez F, Glass C and Ricote M.</p> <!-- Andrea Hevener et al. -->
<p><span class="journalname">The Journal of Clinical Investigation</span> <span class="journalvol">117</span>, 1658-1669 (2007)</p> <!-- The Journal of Clinical Investigation 117, 1658-69 (Jun 2007) -->
<p class="doi"> <!-- <br><a href='http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17525798'>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17525798</a> --> 
[ PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17525798'>17525798</a> doi: <a href="http://dx.doi.org/10.1172/JCI31561">10.1172/JCI31561</a> ]</p></li>

<li>
<h3 class="title">LMSD: LIPID MAPS structure database.</h3>
<p>Sud M, Fahy E, Cotter D, Brown A, Dennis EA, Glass CK, Merrill AH, Jr., Murphy RC, Raetz CR, Russell DW, Subramaniam S</p>
<p><span class="journalname">Nucleic Acids Research</span> <span class="journalvol">35</span>, D527-32 (2007)</p>
<p class="doi">
[ PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17098933'>17098933</a> doi: <a href="http://dx.doi.org/10.1093/nar/gkl838">10.1093/nar/gkl838</a> ]
</p>
</li>

<li><h3 class="title">Kdo2-Lipid A of Escherichia coli, a defined endotoxin that activates macrophages via TLR-4.</h3>
<p>Raetz C, Garrett T, Reynolds C, Shaw W, Moore J, Smith JD, Ribeiro A, Murphy R, Ulevitch R, Fearns C, Reichart D, Glass C, Benner C, Subramaniam S, Harkewicz R, Bowers-Gentry R, Buczynski M, Cooper J, Deems R and Dennis E.</p> <!-- Christian Raetz et al. -->
<p><span class="journalname">Journal of Lipid Research</span> <span class="journalvol">47</span>, 1097-1111 (2006)</p> <!-- Journal of Lipid Research 47, 1097-1111 (May 2006) -->
<p class="doi"> <!-- <br><a href='http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16479018'>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16479018</a> --> [ PMID:<a href='http://www.ncbi.nlm.nih.gov/pubmed/16479018'>16479018</a> doi: <a href="http://dx.doi.org/10.1194/jlr.M600027-JLR200">10.1194/jlr.M600027-JLR200</a> ]
<!--
<br>Relevant LIPID MAPS experimental data:
 <br><a href="/data/results/raw2647/microarray/kdotenpercentserum/index.html">Microarray analysis of RAW 264.7 cells treated with Kdo<sub>2</sub>-Lipid A</a>
 <br><a href="/data/results/raw2647/microarray/kdocompactin/index.html">Microarray analysis of RAW 264.7 cells treated with Kdo<sub>2</sub>-Lipid A and compactin</a>
-->
</p>
</li>

<li><h3 class="title">A comprehensive classification system for lipids.</h3>
<p>Fahy E, Subramaniam S, Brown H, Glass C, Merrill JA, Murphy R, Raetz C, Russell D, Seyama Y, Shaw W, Shimizu T, Spener F, van Meer G, Vannieuwenhze M, White S, Witztum J and Dennis E.</p>
<p><span class="journalname">Journal of Lipid Research</span> <span class="journalvol">46</span>, 839-861 (2005)</p> <!-- Journal of Lipid Research 46, 839-61 (May 2005) -->
<p class="doi"> <!-- <br><a href='http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15722563'>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15722563</a> -->
[ PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/15722563'>15722563</a> doi: <a href="http://dx.doi.org/10.1194/jlr.E400004-JLR200">10.1194/jlr.E400004-JLR200</a> ]
</p>
</li>

<li><h3 class="title">Modulation of human nuclear receptor LRH-1 activity by phospholipids and SHP.</h3>
<p>Ortlund E, Lee Y, Solomon I, Hager J, Safi R, Choi Y, Guan Z, Tripathy A, Raetz C, McDonnell D, Moore D and Redinbo M.</p> <!-- Eric Ortlund et al. -->
<p><span class="journalname">Nature Structural &amp; Molecular Biology</span> <span class="journalvol">12</span>, 357-363 (2005)<p> <!-- Nature Structural & Molecular Biology 12, 357-63 (Apr 2005) -->
<p class="doi"> <!-- <a href='http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15723037'>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15723037</a> --> [ PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/15723037'>15723037</a> doi: <a href="http://dx.doi.org/10.1038/nsmb910">10.1038/nsmb910</a> ]</p></li>

<li><h3 class="title">Reconstruction of cellular signalling networks and analysis of their properties.</h3>
<p>Papin JA, Hunter T, Palsson BO and Subramaniam S.</p>
<p><span class="journalname">Nature Reviews Molecular Cell Biology</span> <span class="journalvol">6</span>, 99-111 (2005)<p> <!-- Nature Reviews Molecular Cell Biology 6, 99-111 (Feb 2005) -->
<p class="doi"> <!-- <br><a href='http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15654321'>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15654321</a> --> [ PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/15654321'>15654321</a> doi: <a href="http://dx.doi.org/10.1038/nrm1570">10.1038/nrm1570</a> ]</p></li>


</ul>
<h2 class="sub-heading">Other key publications relevant to the field of lipidomics</h2>
<ul class="research-lib-months update-details">
<!-- books -->
<strong>Books</strong>
<br>
<br>
<li>
<h3 class='title'><a href="http://www.ncbi.nlm.nih.gov/pubmed/14643793">Lipidomics is emerging.</a></h3>
<p>Lagarde M, G&#233;l&#235;n A, Record M, Vance D, Spener F</p>
<p><span class="journalname">Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids</span> <span class="journalvol">1634</span>,  (2003)</p>
<p class="doi"></p>
</li>

<li>
<h3 class='title'><a href="http://www.sciencedirect.com/science/book/9780444532190">Biochemistry of lipids, lipoproteins and membranes.</a></h3>
<p>Editors Vance DE, Vance JE</p>
<p><span class="journalname">Elsevier</span> (2004)</p>
<p class="doi"> </p>
</li>

<li>
    <h3 class='title'><a href="http://dx.doi.org/10.1002/9783527655946">Lipidomics, Technologies and Applications.</a></h3>
    <p>Edited by: Kim Ekroos</p>
    <p><span class="journalname">John Wiley &amp; Sons</span> <span class="journalvol"></span>, (2012)</p>
    <p class="doi">doi: [<a href="http://dx.doi.org/10.1002/9783527655946">10.1002/9783527655946</a>]
    </p>
</li>

<li>
<h3 class='title'><a href="http://www.crcpress.com/product/isbn/9781466507098">Handbook of Lipid Bilayers, Second Edition.</a></h3>
<p>Derek Marsh</p>
<p><span class="journalname">CRC Press, Inc</span> (2013)</p>
<p class="doi"> </p>
</li>

<!--
Handbook of Lipid Bilayers, Second Edition
<li><h3 class="title"><a href=""></a></h3>
<p>Edited by H. Alex Brown and Lawrence J. Marnett.
<span class="journalname">Chemical Reviews</span>, <strong>111</strong>, 5817-6512 (2011)
</p>
</li>
<br>
-->

<strong>Peer-reviewed journal articles</strong>

<!--
- Thiele, I., Swainston, N., Fleming, R.M.T. et al. A community-driven global reconstruction of human metabolism. Nature Biotechnology, 2013, 31, 419-25;
- Kind, Tobias, Kwang-Hyeon Liu, Do Yup Lee, Brian DeFelice, John K. Meissen, and Oliver Fiehn. "LipidBlast in silico tandem mass spectrometry database for lipid identification." Nature methods 10, no. 8 (2013): 755-758; 
- Tsugawa, Hiroshi, Tomas Cajka, Tobias Kind, Yan Ma, Brendan Higgins, Kazutaka Ikeda, Mitsuhiro Kanazawa, Jean VanderGheynst, Oliver Fiehn, and Masanori Arita. "MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis." Nature methods 12, no. 6 (2015): 523-526;
- K. M. Walter, M.J. Schönenberger, M. Horn, M. Trötzmüller, M.S. Lucas, H.P. Elsässer, A.B. Moser, T. Schwarz, P.A. Gerber, P.L. Faust, H. Moch, H.C. Köfeler, W. Krek and W.J. Kovacs HIF-2α promotes degradation of mammalian peroxisomes by selective autophagy Cell Metabolism 2014, 20 (5):882-897. Cell Metabolism, Vol. 20, pp. 295-305 (2014);
- Takeshi Harayama, Miki Eto, Hideo Shindou, Yoshihiro Kita, Eiji Otsubo, Daisuke Hishikawa, Satoshi Ishii, Kenji Sakimura, Masayoshi Mishina, Takao Shimizu, "Lysophospholipid Acyltransferases Mediate Phosphatidylcholine Diversification to Achieve the Physical Properties Required In Vivo" Cell Metabolism Volume 20, Issue 2, 5 August 2014, Pages 295–305.
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<h3 class='title'><a href="http://dx.doi.org/10.1016/j.cmet.2014.09.017">HIF-2α promotes degradation of mammalian peroxisomes by selective autophagy</a></h3>
<p><span class="journalname">Cell Metabolomism</span> (2014)</p>
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<h3 class='title'><a href="http://dx.doi.org/10.1172/JCI64628">Cannabidiol exerts sebostatic and antiinflammatory effects on human sebocytes.</a></h3>
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<h3 class='title'>Computational Lipidomics:  A multiplexed analysis of dynamic changes in membrane lipid composition during signal transduction.</h3>
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<h3 class='title'>Processing methods for differential analysis of LC/MS profile data.</h3>
<p>Mikko Katajamaa, Matej Ore&#353;i&#269;</p>
<p><span class="journalname">BMC Bioinformatics</span> <span class="journalvol">6</span>,  (2005)</p>
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<h3 class='title'>Bioinformatics strategies for lipidomics analysis: characterization of obesity related hepatic steatosis.</h3>
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<h3 class='title'>Normalization method for metabolomics data using optimal selection of multiple internal standards.</h3>
<p>Marko Sysi-Aho, Mikko Katajamaa, Laxman Yetukuri, Matej Ore&#353;i&#269;</p>
<p><span class="journalname">BMC Bioinformatics</span> <span class="journalvol">8</span>,  (2007)</p>
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<h3 class='title'>An analysis of the epitope knowledge related to Mycobacteria.</h3>
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<h3 class='title'>Atherosclerosis and liver inflammation induced by increased dietary cholesterol intake: a combined transcriptomics and metabolomics analysis.</h3>
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<h3 class='title'>Bench-to-bedside review: Mitochondrial injury, oxidative stress and apoptosis: there is nothing more practical than a good theory.</h3>
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<p><span class="journalname">Critical Care</span> <span class="journalvol">12</span>,  (2008)</p>
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<p><span class="journalname">Briefings in Functional Genomics and Proteomics</span> <span class="journalvol">7</span>, 395-409 (2008)</p>
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<h3 class='title'>Genetics of asthma: a molecular biologist perspective.</h3>
<p>Amrendra Kumar, Balaram Ghosh</p>
<p><span class="journalname">Clinical and Molecular Allergy</span> <span class="journalvol">7</span>,  (2009)</p>
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<p><span class="journalname">Genome Medicine</span> <span class="journalvol">1</span>,  (2009)</p>
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<p>Dennis, E.A.</p>
<p><span class="journalname">Proc. Natl. Acad. Sci. U.S.A.</span> <span class="journalvol">106</span>, 2089-2090 (2009)</p>
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<p><span class="journalname">BMC Systems Biology</span> <span class="journalvol">3</span>,  (2009)</p>
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<p><span class="journalname">BMC Bioinformatics</span> <span class="journalvol">10</span>,  (2009)</p>
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<p>Henning Redestig, Miyako Kusano, Atsushi Fukushima, Fumio Matsuda, Kazuki Saito, Masanori Arita</p>
<p><span class="journalname">BMC Bioinformatics</span> <span class="journalvol">11</span>,  (2010)</p>
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<h3 class='title'>Role of platelets in neuroinflammation: a wide-angle perspective.</h3>
<p>Lawrence L Horstman, Wenche Jy, Yeon S Ahn, Robert Zivadinov, Amir H Maghzi, Masoud Etemadifar, J Steven Alexander, Alireza Minagar</p>
<p><span class="journalname">Journal of Neuroinflammation</span> <span class="journalvol">7</span>,  (2010)</p>
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<p><span class="journalname">BMC Bioinformatics</span> <span class="journalvol">11</span>,  (2010)</p>
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<p>Ying Liu, Yanfeng Chen, Amin Momin, Rebecca Shaner, Elaine Wang, Nathan J Bowen, Lilya V Matyunina, L Walker, John F McDonald, M Sullards, Alfred H Merrill</p>
<p><span class="journalname">Molecular Cancer</span> <span class="journalvol">9</span>,  (2010)</p>
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<h3 class='title'>Evaluation of bioactive sphingolipids in 4-HPR-resistant leukemia cells.</h3>
<p>Aintzane Apraiz, Jolanta K Idkowiak-Baldys, Mar&#237;a Boyano, Gorka P&#233;rez-Yarza, Yusuf A Hannun, Aintzane Asumendi</p>
<p><span class="journalname">BMC Cancer</span> <span class="journalvol">11</span>,  (2011)</p>
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<h3 class='title'>Contribution of bacterial outer membrane vesicles to innate bacterial defense.</h3>
<p>Andrew J Manning, Meta J Kuehn</p>
<p><span class="journalname">BMC Microbiology</span> <span class="journalvol">11</span>,  (2011)</p>
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<h3 class='title'>The Protein Lipidation and Its Analysis.</h3>
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<p><span class="journalname">J Glycom Lipidom</span> <span class="journalvol">S2</span>,  (2011)</p>
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<h3 class='title'>Gaussian graphical modeling reconstructs pathway reactions from high-throughput metabolomics data.</h3>
<p>Jan Krumsiek, Karsten Suhre, Thomas Illig, Jerzy Adamski, Fabian J Theis</p>
<p><span class="journalname">BMC Systems Biology</span> <span class="journalvol">5</span>,  (2011)</p>
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<h3 class='title'>Review: Accurate Quantification of Lipid Species by Electrospray Ionization Mass Spectrometry &mdash; Meets a Key Challenge in Lipidomics.</h3>
<p>Kui Yang and Xianlin Han</p>
<p><span class="journalname">Metabolites</span> <span class="journalvol">1</span>, 21-40 (2011)</p>
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<h3 class='title'>Metabolome in schizophrenia and other psychotic disorders: a general population-based study.</h3>
<p>Matej Ore&#353;i&#269;, Jing Tang, Tuulikki Sepp&#228;nen-Laakso, Ismo Mattila, Suoma E Saarni, Samuli I Saarni, Jouko L&#246;nnqvist, Marko Sysi-Aho, Tuulia Hy&#246;tyl&#228;inen, Jonna Per&#228;l&#228;, Jaana Suvisaari</p>
<p><span class="journalname">Genome Medicine</span> <span class="journalvol">3</span>,  (2011)</p>
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<h3 class='title'>Methods in Comprehensive Mass Spectrometry-Based Measurement of Sphingolipids.</h3>
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<p><span class="journalname">J Glycom Lipidom</span> <span class="journalvol">S2</span>,  (2011)</p>
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<p>Pirkko Mattila, Sakari Joenv&#228;&#228;r&#228;, Jutta Renkonen, Sanna Toppila-Salmi, Risto Renkonen</p>
<p><span class="journalname">Clinical and Translational Allergy</span> <span class="journalvol">1</span>,  (2011)</p>
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<p>Shakti Gupta, Mano R Maurya, Alfred H Merrill Jr, Christopher K Glass, Shankar Subramaniam</p>
<p><span class="journalname">BMC Systems Biology</span> <span class="journalvol">5</span>,  (2011)</p>
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<h3 class='title'>Clinical review: Exogenous surfactant therapy for acute lung injury/acute respiratory distress syndrome - where do we go from here?</h3>
<p>Ahilanandan Dushianthan, Rebecca Cusack, Victoria Goss, Anthony D Postle, Mike PW Grocott</p>
<p><span class="journalname">Critical Care</span> <span class="journalvol">16</span>,  (2012)</p>
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<h3 class='title'>On the hypothesis-free testing of metabolite ratios in genome-wide and metabolome-wide association studies.</h3>
<p>Ann-Kristin Petersen, Jan Krumsiek, Brigitte W&#228;gele, Fabian J Theis, H-Erich Wichmann, Christian Gieger, Karsten Suhre</p>
<p><span class="journalname">BMC Bioinformatics</span> <span class="journalvol">13</span>,  (2012)</p>
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<h3 class='title'>Review: Perturbations of Lipid Metabolism Indexed by Lipidomic Biomarkers.</h3>
<p>Antonin Lamaziere, Claude Wolf and Peter J. Quinn</p>
<p><span class="journalname">Metabolites</span> <span class="journalvol">2</span>, 1-18 (2012)</p>
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<li>
<h3 class='title'>Article: Shotgun Lipidomics by Sequential Precursor Ion Fragmentation on a Hybrid Quadrupole Time-of-Flight Mass Spectrometer.</h3>
<p>Brigitte Simons, Dimple Kauhanen, Tuulia Sylv&#228;nne, Kirill Tarasov, Eva Duchoslav and Kim Ekroos</p>
<p><span class="journalname">Metabolites</span> <span class="journalvol">2</span>, 195-213 (2012)</p>
<p class="doi"> doi: [<a href="http://dx.doi.org/10.3390/metabo2010195">10.3390/metabo2010195</a>]</p>
</li>

<li>
<h3 class='title'>Metabolomics of human breast cancer: new approaches for tumor typing and biomarker discovery.</h3>
<p>Carsten Denkert, Elmar Bucher, Mika Hilvo, Reza Salek, Matej Ore&#353;i&#269;, Julian Griffin, Scarlet Brockm&#246;ller, Frederick Klauschen, Sibylle Loibl, Dinesh Barupal, Jan Budczies, Kristiina Iljin, Valentina Nekljudova, Oliver Fiehn</p>
<p><span class="journalname">Genome Medicine</span> <span class="journalvol">4</span>,  (2012)</p>
<p class="doi"> doi: [<a href="http://dx.doi.org/10.1186/gm336">10.1186/gm336</a>]</p>
</li>

<li>
<h3 class='title'>Article: Comparative Lipidomic Profiling of S. cerevisiae and Four Other Hemiascomycetous Yeasts.</h3>
<p>Eva-Maria Hein and Heiko Hayen</p>
<p><span class="journalname">Metabolites</span> <span class="journalvol">2</span>, 254-267 (2012)</p>
<p class="doi"> doi: [<a href="http://dx.doi.org/10.3390/metabo2010254">10.3390/metabo2010254</a>]</p>
</li>

<li>
<h3 class='title'>Article: Metabolomic and Lipidomic Analysis of the Heart of Peroxisome Proliferator-Activated Receptor-&#947; Coactivator 1-&#946; Knock Out Mice on a High Fat Diet.</h3>
<p>Gregor McCombie, Gema Medina-Gomez, Christopher J Lelliott, Antonio Vidal-Puig and Julian L Griffin</p>
<p><span class="journalname">Metabolites</span> <span class="journalvol">2</span>, 366-381 (2012)</p>
<p class="doi"> doi: [<a href="http://dx.doi.org/10.3390/metabo2020366">10.3390/metabo2020366</a>]</p>
</li>

<li>
<h3 class='title'>Review: Lipidomics of Glycosphingolipids.</h3>
<p>Hany Farwanah and Thomas Kolter</p>
<p><span class="journalname">Metabolites</span> <span class="journalvol">2</span>, 134-164 (2012)</p>
<p class="doi"> doi: [<a href="http://dx.doi.org/10.3390/metabo2010134">10.3390/metabo2010134</a>]</p>
</li>

<li>
<h3 class='title'>Review: Mass Spectrometry Based Lipidomics: An Overview of Technological Platforms.</h3>
<p>Harald C. K&#246;feler, Alexander Fauland, Gerald N. Rechberger and Martin Tr&#246;tzm&#252;ller</p>
<p><span class="journalname">Metabolites</span> <span class="journalvol">2</span>, 19-38 (2012)</p>
<p class="doi"> doi: [<a href="http://dx.doi.org/10.3390/metabo2010019">10.3390/metabo2010019</a>]</p>
</li>

<li>
<h3 class='title'>VANTED v2: a framework for systems biology applications.</h3>
<p>Hendrik Rohn, Astrid Junker, Anja Hartmann, Eva Grafahrend-Belau, Hendrik Treutler, Matthias Klapperst&#252;ck, Tobias Czauderna, Christian Klukas, Falk Schreiber</p>
<p><span class="journalname">BMC Systems Biology</span> <span class="journalvol">6</span>,  (2012)</p>
<p class="doi"> doi: [<a href="http://dx.doi.org/10.1186/1752-0509-6-139">10.1186/1752-0509-6-139</a>]</p>
</li>

<li>
<h3 class='title'>Structure-based classification and ontology in chemistry.</h3>
<p>Janna Hastings, Despoina Magka, Colin Batchelor, Lian Duan, Robert Stevens, Marcus Ennis, Christoph Steinbeck</p>
<p><span class="journalname">Journal of Cheminformatics</span> <span class="journalvol">4</span>,  (2012)</p>
<p class="doi"> doi: [<a href="http://dx.doi.org/10.1186/1758-2946-4-8">10.1186/1758-2946-4-8</a>]</p>
</li>

<li>
<h3 class='title'>Genome-wide association studies with metabolomics.</h3>
<p>Jerzy Adamski</p>
<p><span class="journalname">Genome Medicine</span> <span class="journalvol">4</span>,  (2012)</p>
<p class="doi"> doi: [<a href="http://dx.doi.org/10.1186/gm333">10.1186/gm333</a>]</p>
</li>

<li>
<h3 class='title'>Self-organizing ontology of biochemically relevant small molecules.</h3>
<p>Leonid L Chepelev, Janna Hastings, Marcus Ennis, Christoph Steinbeck, Michel Dumontier</p>
<p><span class="journalname">BMC Bioinformatics</span> <span class="journalvol">13</span>,  (2012)</p>
<p class="doi"> doi: [<a href="http://dx.doi.org/10.1186/1471-2105-13-3">10.1186/1471-2105-13-3</a>]</p>
</li>

<li>
<h3 class='title'>Glycosphingolipid Mediated Caveolin-1 Oligomerization.</h3>
<p>Liming Shu and James A. Shayman</p>
<p><span class="journalname">J Glycom Lipidom</span> <span class="journalvol">S2</span>,  (2012)</p>
<p class="doi"> doi: [<a href="http://dx.doi.org/10.4172/2153-0637.S2-003">10.4172/2153-0637.S2-003</a>]</p>
</li>

<li>
<h3 class='title'>New perspectives on central and peripheral immune responses to acute traumatic brain injury.</h3>
<p>Mahasweta Das, Subhra Mohapatra, Shyam S Mohapatra</p>
<p><span class="journalname">Journal of Neuroinflammation</span> <span class="journalvol">9</span>,  (2012)</p>
<p class="doi"> doi: [<a href="http://dx.doi.org/10.1186/1742-2094-9-236">10.1186/1742-2094-9-236</a>]</p>
</li>

<li>
<h3 class='title'>Phospholipids and insulin resistance in psychosis: a lipidomics study of twin pairs discordant for schizophrenia.</h3>
<p>Matej Ore&#353;i&#269;, Tuulikki Sepp&#228;nen-Laakso, Daqiang Sun, Jing Tang, Sebastian Therman, Rachael Viehman, Ulla Mustonen, Theo G van Erp, Tuulia Hy&#246;tyl&#228;inen, Paul Thompson, Arthur W Toga, Matti O Huttunen, Jaana Suvisaari, Jaakko Kaprio, Jouko L&#246;nnqvist, Tyrone D Cannon</p>
<p><span class="journalname">Genome Medicine</span> <span class="journalvol">4</span>,  (2012)</p>
<p class="doi"> doi: [<a href="http://dx.doi.org/10.1186/gm300">10.1186/gm300</a>]</p>
</li>

<li>
<h3 class='title'>Article: Quantification of Signaling Lipids by Nano-Electrospray Ionization Tandem Mass Spectrometry (Nano-ESI MS/MS).</h3>
<p>Mathias Haag, Angelika Schmidt, Timo Sachsenheimer and Britta Br&#252;gger</p>
<p><span class="journalname">Metabolites</span> <span class="journalvol">2</span>, 57-76 (2012)</p>
<p class="doi"> doi: [<a href="http://dx.doi.org/10.3390/metabo2010057">10.3390/metabo2010057</a>]</p>
</li>

<li>
<h3 class='title'>A genome-scale metabolic model of the lipid-accumulating yeast Yarrowia lipolytica.</h3>
<p>Nicolas Loira, Thierry Dulermo, Jean-Marc Nicaud, David Sherman</p>
<p><span class="journalname">BMC Systems Biology</span> <span class="journalvol">6</span>,  (2012)</p>
<p class="doi"> doi: [<a href="http://dx.doi.org/10.1186/1752-0509-6-35">10.1186/1752-0509-6-35</a>]</p>
</li>

<li>
<h3 class='title'>Lipidomics of Alzheimer's disease: current status.</h3>
<p>Paul L Wood</p>
<p><span class="journalname">Alzheimer's Research & Therapy</span> <span class="journalvol">4</span>,  (2012)</p>
<p class="doi"> doi: [<a href="http://dx.doi.org/10.1186/alzrt103">10.1186/alzrt103</a>]</p>
</li>

<li>
<h3 class='title'>Ceramide Profiles of Human Serum Gangliosides GM2 and GD1a exhibit Cancer-associated Alterations.</h3>
<p>Stephan Kirsch, Jamal Souady, Michael Mormann, Laura Bindila and JasnaPeter-Katalini&#263;</p>
<p><span class="journalname">J Glycom Lipidom</span> <span class="journalvol">S2</span>,  (2012)</p>
<p class="doi"> doi: [<a href="http://dx.doi.org/10.4172/2153-0637.S2-005">10.4172/2153-0637.S2-005</a>]</p>
</li>

<li>
<h3 class='title'>Imaging Technology of Complex Lipid Molecular Species by a Combination of TLC-Blot and MALDI-TOF &ndash;Special Reference to Human Brain Ganglioside Molecular Species.</h3>
<p>Tania Valdes-Gonzalez, Naoko Goto-Inoue, Takahiro Hayasaka, Hironobu Ishiyama, Mitsutoshi Setou and Takao Taki</p>
<p><span class="journalname">J Glycom Lipidom</span> <span class="journalvol">S2</span>,  (2012)</p>
<p class="doi"> doi: [<a href="http://dx.doi.org/10.4172/2153-0637.S2-004">10.4172/2153-0637.S2-004</a>]</p>
</li>

<li>
<h3 class='title'>Resolvin D1 attenuates inflammation in lipopolysaccharide-induced acute lung injury through a process involving the PPAR_/NF-&#954;B pathway.</h3>
<p>Zenglin Liao, Jiajia Dong, Wei Wu, Ting Yang, Tao Wang, Lingli Guo, Lei Chen, Dan Xu, Fuqiang Wen</p>
<p><span class="journalname">Respiratory Research</span> <span class="journalvol">13</span>,  (2012)</p>
<p class="doi"> doi: [<a href="http://dx.doi.org/10.1186/1465-9921-13-110">10.1186/1465-9921-13-110</a>]</p>
</li>

<li>
<h3 class='title'>Applications of metabolomics for understanding the action of peroxisome proliferator-activated receptors (PPARs) in diabetes, obesity and cancer.</h3>
<p>Zsuzsanna Ament, Mojgan Masoodi, Julian L Griffin</p>
<p><span class="journalname">Genome Medicine</span> <span class="journalvol">4</span>,  (2012)</p>
<p class="doi"> doi: [<a href="http://dx.doi.org/10.1186/gm331">10.1186/gm331</a>]</p>
</li>

<li>
<h3 class='title'>Clinical, imaging, and pathological heterogeneity of the Alzheimer's disease syndrome.</h3>
<p>Benjamin Lam, Mario Masellis, Morris Freedman, Donald T Stuss, Sandra E Black</p>
<p><span class="journalname">Alzheimer's Research & Therapy</span> <span class="journalvol">5</span>,  (2013)</p>
<p class="doi"> doi: [<a href="http://dx.doi.org/10.1186/alzrt155">10.1186/alzrt155</a>]</p>
</li>

<li>
<h3 class='title'>MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis.</h3>
<p>Brian L LaMarche, Kevin L Crowell, Navdeep Jaitly, Vladislav A Petyuk, Anuj R Shah, Ashoka D Polpitiya, John D Sandoval, Gary R Kiebel, Matthew E Monroe, Stephen J Callister, Thomas O Metz, Gordon A Anderson, Richard D Smith</p>
<p><span class="journalname">BMC Bioinformatics</span> <span class="journalvol">14</span>,  (2013)</p>
<p class="doi"> doi: [<a href="http://dx.doi.org/10.1186/1471-2105-14-49">10.1186/1471-2105-14-49</a>]</p>
</li>

<li>
<h3 class='title'>Functional decorations: post-translational modifications and heart disease delineated by targeted proteomics.</h3>
<p>Kiersten A Liddy, Melanie Y White, Stuart J Cordwell</p>
<p><span class="journalname">Genome Medicine</span> <span class="journalvol">5</span>,  (2013)</p>
<p class="doi"> doi: [<a href="http://dx.doi.org/10.1186/gm424">10.1186/gm424</a>]</p>
</li>

</ul>

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